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CmoCh10G004990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G004990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEndo/exonuclease/phosphatase domain-containing protein
Genome locationCmo_Chr10:2225699..2228109
RNA-Seq ExpressionCmoCh10G004990
SyntenyCmoCh10G004990
Gene Ontology termsGO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022921742.1 uncharacterized protein LOC111429898 isoform X1 [Cucurbita moschata]1.7e-3686.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
XP_022921743.1 uncharacterized protein LOC111429898 isoform X2 [Cucurbita moschata]1.7e-3686.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
XP_022988587.1 uncharacterized protein LOC111485786 isoform X1 [Cucurbita maxima]1.7e-3686.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
XP_023515384.1 uncharacterized protein LOC111779555 isoform X1 [Cucurbita pepo subsp. pepo]1.7e-3686.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
XP_023515385.1 uncharacterized protein LOC111779555 isoform X2 [Cucurbita pepo subsp. pepo]1.7e-3686.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
TrEMBL top hitse value%identityAlignment
A0A0A0LWF4 Endo/exonuclease/phosphatase domain-containing protein3.5e-3581.11Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQL+FLQQGLPGY++FGISRKGSHDDSDEHCTI+YDKEKVELLEGGTFWLSESPSVPGS+SWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
A0A6J1E1B2 uncharacterized protein LOC111429898 isoform X18.4e-3786.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
A0A6J1E4Q1 uncharacterized protein LOC111429898 isoform X28.4e-3786.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
A0A6J1JDF5 uncharacterized protein LOC111485786 isoform X18.4e-3786.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
A0A6J1JMQ8 uncharacterized protein LOC111485786 isoform X28.4e-3786.67Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S ++    + VKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30900.1 DNAse I-like superfamily protein2.0e-3068.89Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S  V    + VKSQL++LQQGLP Y++FGISR G  D +DEHCTIF++KEKVELLEGGTFWLSESPSVPGS +WGS  P IATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
AT4G30900.2 DNAse I-like superfamily protein2.0e-3068.89Show/hide
Query:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA
        V+ S S  V    + VKSQL++LQQGLP Y++FGISR G  D +DEHCTIF++KEKVELLEGGTFWLSESPSVPGS +WGS  P IATWA
Subjt:  VVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATCAACCACCAGAGAGTTCAAATTCATGGGAGAAGAGGAGGGATTTGTGTATCAGTGTCCTCACTAGCTATTCTCCAGCGATTCTCTGCACTCAGCAAG
GATTTCGTTGGAGTTTTGACAGGCATGGCCTGGGTTATTTTGATCGGAAGCTCCATTGTTGTTTGCTCCAATTCTAGTAGTGTGGACATTTTAGTGGAGCGTGTG
AAATCTCAGTTGGAGTTTCTTCAGCAGGGCTTGCCTGGCTATGAGAAATTTGGAATTTCAAGAAAAGGATCCCATGACGATTCAGATGAACACTGCACAATCTTT
TATGACAAGGAGAAGGTAGAGCTGTTAGAAGGTGGCACGTTTTGGTTGTCGGAATCACCTTCTGTCCCAGGAAGCGTGTCGTGGGGTTCGATTGCTCCGCATATT
GCGACATGGGCGATATCCTTGAGTTCTATTAAGAATTCTCTTACATTGCATTTTAACATATCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
AATTGTGGGACTCTCACGTGCCTCGTTAAAACCCAGTGCCCTCCCTTCGGACACGATCAAATTAACCAAGGATCTCTCTCTCTCTCTCTCTCTAAGCTCAGCCAC
TACTGATTCCTCAACCTGTACCAGAAGGATGGAATGTGGCAACAGGGTATAGCTGATTCTGATCCTTTTTAGGTTTAGAATCAATGATTAAGGAAAGGTAGGGAT
TGAGGAGGAAATTCTGGAGAAAAATGAGTGTTACTTTGACTGTAATGACCTTCAATCTCCATGACGATCAACCACCAGAGAGTTCAAATTCATGGGAGAAGAGGA
GGGATTTGTGTATCAGTGTCCTCACTAGCTATTCTCCAGCGATTCTCTGCACTCAGCAAGGATTTCGTTGGAGTTTTGACAGGCATGGCCTGGGTTATTTTGATC
GGAAGCTCCATTGTTGTTTGCTCCAATTCTAGTAGTGTGGACATTTTAGTGGAGCGTGTGAAATCTCAGTTGGAGTTTCTTCAGCAGGGCTTGCCTGGCTATGAG
AAATTTGGAATTTCAAGAAAAGGATCCCATGACGATTCAGATGAACACTGCACAATCTTTTATGACAAGGAGAAGGTAGAGCTGTTAGAAGGTGGCACGTTTTGG
TTGTCGGAATCACCTTCTGTCCCAGGAAGCGTGTCGTGGGGTTCGATTGCTCCGCATATTGCGACATGGGCGATATCCTTGAGTTCTATTAAGAATTCTCTTACA
TTGCATTTTAACATATCCTTTTGACTTTGTATGGAGAACCTTGAGTTATTTGTTAACTTGACATGATGCCCACACATTCCAACTGAAAGGAGTCGAGCCTCCTGG
GTTCTCGTTTCAGATAGTAAACACAAACATGGACGAGCTCAACCCCCGTGCTCGTAGGCGAAGTGCTTTGCTTACATGGCAGCACATTGCATCCTTACCTCCTAG
CTTGCCAGTTATATATTGTGGAGGTTTCAACACGGAAAAGGAATCGACTACGGGTCGTTTTCTTCTTGGGAGATCGAGAGAAAAGGGTGCAGTGGGGGACATGAG
AGATACATGGGCAATCGCTCGGGCGAGGAAGAACGTTTCTCTCATTCGAACCTATCATGGTTTCAAAGGTGACAAACAGGGAGCTTTCGAGTTTTTCAAGCTGAT
TCTACGAGCGCTTTGCCTTTGCTGGGATCGCCAGACTCAAGATCTACATGTAGATTGGATTCTTTTCAGAGGTAGATCTTTGATCCCTGTCCTGTGTGAAGTGGT
GAATGATAATATCGACGGGTTCTACCCGTCGTCTCACTACCCTTTGTTTGCCGAATTCATGCTTCCTCGTACCGTCAGAATGCTTGAAACAACAACTCAAGAGTA
ACACTTGATCACCAATCTGTCATAACTCAGAATTTCCCATTTTTCCCTGTTTAAGCTCCAAATGATCTGTTCATTGGTGTTAGAAGAAGATGTTTATATCAGCAA
GTTCTCTGTACTGTTTTACACTGTATGATAATCTTCAAATGACACTTGAACTGCTTCAAAATTGCTTCTGAGAATCTCAAAGTTGTATCGAATGTTCTTCCATAT
TAAGAATTTGTTTCAAGAATTGGTCTCTTTAGCTACCAA
Protein sequenceShow/hide protein sequence
MTINHQRVQIHGRRGGICVSVSSLAILQRFSALSKDFVGVLTGMAWVILIGSSIVVCSNSSSVDILVERVKSQLEFLQQGLPGYEKFGISRKGSHDDSDEHCTIF
YDKEKVELLEGGTFWLSESPSVPGSVSWGSIAPHIATWAISLSSIKNSLTLHFNISF