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CmoCh10G005250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G005250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Genome locationCmo_Chr10:2388571..2389790
RNA-Seq ExpressionCmoCh10G005250
SyntenyCmoCh10G005250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589797.1 hypothetical protein SDJN03_15220, partial [Cucurbita argyrosperma subsp. sororia]5.9e-6796.12Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
        MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQ+QQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGG F+RKKQRKNRFQY
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY

Query:  DPESYALNFDDGFDGEGDDHHPPIAFSTR
        DPESYALNFDDGFDGE DD HPPIAFSTR
Subjt:  DPESYALNFDDGFDGEGDDHHPPIAFSTR

KAG7023468.1 hypothetical protein SDJN02_14493, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-6796.12Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
        MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQ+QQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGG F+RKKQRKNRFQY
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY

Query:  DPESYALNFDDGFDGEGDDHHPPIAFSTR
        DPESYALNFDDGFDGE DD HPPIAFSTR
Subjt:  DPESYALNFDDGFDGEGDDHHPPIAFSTR

XP_022921805.1 uncharacterized protein LOC111429948 [Cucurbita moschata]3.4e-70100Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
        MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY

Query:  DPESYALNFDDGFDGEGDDHHPPIAFSTR
        DPESYALNFDDGFDGEGDDHHPPIAFSTR
Subjt:  DPESYALNFDDGFDGEGDDHHPPIAFSTR

XP_022987488.1 uncharacterized protein LOC111485032 [Cucurbita maxima]5.2e-5585.07Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK
        MATHPTRPREQDD QDIDEA+PSNGC GCFRL    FGFNRNGNYEGRSLLQ+Q+G      MVRK KKLKEVSEMVGGPRWKNFIRKMGGF KRKKQRK
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK

Query:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
        NRFQYDPESYALNF+ GFDGE DDHHPPIAFSTR
Subjt:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

XP_023516738.1 uncharacterized protein LOC111780544 [Cucurbita pepo subsp. pepo]1.6e-6491.79Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK
        MATHPTRP+EQDDLQDIDEA+PSNGC GCFRL    FGFNRNGNYEGRSLLQ+Q+GWEEESWMVRKLKKLK+VSEMVGGPRWKNFIRKMGGFFKRKKQRK
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK

Query:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
        NRFQYDPESYALNFDDGFDGE DDHHPPIAFSTR
Subjt:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

TrEMBL top hitse value%identityAlignment
A0A0A0LTG0 Uncharacterized protein1.8e-4871.43Show/hide
Query:  MATHPTRP---------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFK
        MATH TRP          +QDDLQDID+++ SNGCGCF+LFGF  NRN NYEG +LLQ++QG EEESWMV++LKK++EVSEMV GP+WKNFIRKMGG+ K
Subjt:  MATHPTRP---------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFK

Query:  RKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
         KK+R NRFQYDPESYALNFD GFDGE DDHHPPI FS+R
Subjt:  RKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

A0A1S3B8N4 uncharacterized protein LOC1034873832.1e-4972.34Show/hide
Query:  MATHPTRP----------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFF
        MA+H TRP          ++QDDLQDID+++ SNGCGCF+LFGF  NRN NYEG +LLQ++QG EEESWMV+KLKK+KEVSEMV GP+WKNFIRKMGG+ 
Subjt:  MATHPTRP----------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFF

Query:  KRKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
        K KKQR NRFQYDPESYALNFD GFDGE DDHHPPI FS+R
Subjt:  KRKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

A0A5A7U6Q0 Uncharacterized protein2.1e-4972.34Show/hide
Query:  MATHPTRP----------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFF
        MA+H TRP          ++QDDLQDID+++ SNGCGCF+LFGF  NRN NYEG +LLQ++QG EEESWMV+KLKK+KEVSEMV GP+WKNFIRKMGG+ 
Subjt:  MATHPTRP----------REQDDLQDIDEAVPSNGCGCFRLFGF--NRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFF

Query:  KRKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
        K KKQR NRFQYDPESYALNFD GFDGE DDHHPPI FS+R
Subjt:  KRKKQRKNRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

A0A6J1E6U3 uncharacterized protein LOC1114299481.6e-70100Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
        MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQY

Query:  DPESYALNFDDGFDGEGDDHHPPIAFSTR
        DPESYALNFDDGFDGEGDDHHPPIAFSTR
Subjt:  DPESYALNFDDGFDGEGDDHHPPIAFSTR

A0A6J1JJK8 uncharacterized protein LOC1114850322.5e-5585.07Show/hide
Query:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK
        MATHPTRPREQDD QDIDEA+PSNGC GCFRL    FGFNRNGNYEGRSLLQ+Q+G      MVRK KKLKEVSEMVGGPRWKNFIRKMGGF KRKKQRK
Subjt:  MATHPTRPREQDDLQDIDEAVPSNGC-GCFRL----FGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRK

Query:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR
        NRFQYDPESYALNF+ GFDGE DDHHPPIAFSTR
Subjt:  NRFQYDPESYALNFDDGFDGEGDDHHPPIAFSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)5.1e-0833.67Show/hide
Query:  EESWMVRKLKKLKEVSEMVGGPRWKNFIRKM---------------------GGFFKRKKQRKNRFQYDPESYALNFDDGFD-GEGDDHHPPIAFSTR
        +E W +R  ++++E SE+V GPRWK +IR+                      GG    +   + +F+YD  SY+LNFDDG   G  DD  P   +S R
Subjt:  EESWMVRKLKKLKEVSEMVGGPRWKNFIRKM---------------------GGFFKRKKQRKNRFQYDPESYALNFDDGFD-GEGDDHHPPIAFSTR

AT3G48020.1 unknown protein1.5e-0743.84Show/hide
Query:  EEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQR------KNRFQYDPESYALNFDDGFDGEGDD
        +E  W VR   K++E SE+V GPRWK FIR+    F R  +R       ++F+YDP SY L+F+D  D + DD
Subjt:  EEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQR------KNRFQYDPESYALNFDDGFDGEGDD

AT5G14890.1 NHL domain-containing protein1.6e-0634.06Show/hide
Query:  EQDDLQDIDEAV-PSNGCGCFRL--FGFNRNGNYEGRSLLQRQQGWE----EESWMVRKLKKLKEVSEMVGGPRWKNFIRKMG----------GFFKRKK
        E D   ++ EA+    GC CF L   G ++     G    QR +  +    +E W V    K++E SE+V GP+WK FIR+ G          G   R +
Subjt:  EQDDLQDIDEAV-PSNGCGCFRL--FGFNRNGNYEGRSLLQRQQGWE----EESWMVRKLKKLKEVSEMVGGPRWKNFIRKMG----------GFFKRKK

Query:  QRKNRFQYDPESYALNFDDGFD-GEGDDHHPPIAFSTR
             F+YD  SY+LNFDDG   G  +D  P   +S R
Subjt:  QRKNRFQYDPESYALNFDDGFD-GEGDDHHPPIAFSTR

AT5G25240.1 unknown protein1.3e-1445.3Show/hide
Query:  DIDEAVPSNGCGCFRLFGFN--RNGNYEGRSLLQRQQGW----EEE---SWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKN-RFQYDPESY
        D +E     GCG FR F F   R G+ E RS    + GW    +EE   +W   KLK LKE+SE + GP+WKNFIR       RKK R++  F YD ++Y
Subjt:  DIDEAVPSNGCGCFRLFGFN--RNGNYEGRSLLQRQQGW----EEE---SWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKN-RFQYDPESY

Query:  ALNFDDGFDGEGDDHHP
        +LNFDDG  G+G D  P
Subjt:  ALNFDDGFDGEGDDHHP

AT5G62865.1 unknown protein7.9e-0937.38Show/hide
Query:  CGCFRLFGFNRNGNYEGRSLLQR----------QQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKK--QRKNRFQYDPESYALNFDDGF
        C CF  F  +R+    G S   R              +E  W +R   K++E SE+V GPRWK FIR+     +R +      +FQYDP SY+LNFDD  
Subjt:  CGCFRLFGFNRNGNYEGRSLLQR----------QQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKK--QRKNRFQYDPESYALNFDDGF

Query:  DGEGDDH
        D E D++
Subjt:  DGEGDDH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCCATCCAACCAGACCACGGGAACAGGATGACCTTCAGGACATCGACGAGGCCGTTCCCTCAAATGGGTGTGGCTGTTTTCGGCTATTCGGGTTCAATCGGAA
CGGTAATTACGAAGGTAGAAGTCTTCTGCAGCGGCAACAGGGCTGGGAAGAGGAGTCTTGGATGGTGAGGAAATTGAAGAAGTTGAAGGAGGTTTCAGAAATGGTGGGTG
GACCCAGATGGAAGAACTTCATCAGAAAAATGGGTGGCTTTTTTAAGAGGAAAAAACAGAGGAAAAACAGGTTTCAGTATGACCCTGAAAGCTATGCTCTCAATTTCGAC
GACGGTTTCGATGGGGAAGGCGACGATCATCACCCGCCAATTGCCTTTTCTACGAGATCCAAATCCTTCTCGCATTGCAATACTGAATTGTCAACTATTTCTCGATTTGA
GAACTCGCGGTATAGGCAGCTACAGCCGCGAATTTCCTTCCTCCGCCGGAGATCGTCCTTCCAGTTTTCTATGTCTCAGATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCCATCCAACCAGACCACGGGAACAGGATGACCTTCAGGACATCGACGAGGCCGTTCCCTCAAATGGGTGTGGCTGTTTTCGGCTATTCGGGTTCAATCGGAA
CGGTAATTACGAAGGTAGAAGTCTTCTGCAGCGGCAACAGGGCTGGGAAGAGGAGTCTTGGATGGTGAGGAAATTGAAGAAGTTGAAGGAGGTTTCAGAAATGGTGGGTG
GACCCAGATGGAAGAACTTCATCAGAAAAATGGGTGGCTTTTTTAAGAGGAAAAAACAGAGGAAAAACAGGTTTCAGTATGACCCTGAAAGCTATGCTCTCAATTTCGAC
GACGGTTTCGATGGGGAAGGCGACGATCATCACCCGCCAATTGCCTTTTCTACGAGATCCAAATCCTTCTCGCATTGCAATACTGAATTGTCAACTATTTCTCGATTTGA
GAACTCGCGGTATAGGCAGCTACAGCCGCGAATTTCCTTCCTCCGCCGGAGATCGTCCTTCCAGTTTTCTATGTCTCAGATCTGA
Protein sequenceShow/hide protein sequence
MATHPTRPREQDDLQDIDEAVPSNGCGCFRLFGFNRNGNYEGRSLLQRQQGWEEESWMVRKLKKLKEVSEMVGGPRWKNFIRKMGGFFKRKKQRKNRFQYDPESYALNFD
DGFDGEGDDHHPPIAFSTRSKSFSHCNTELSTISRFENSRYRQLQPRISFLRRRSSFQFSMSQI