CuGenDBv2

Gene ID	CmoCh10G005270
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Genome location	Cmo_Chr10:2398058..2399251
RNA-Seq Expression	CmoCh10G005270
Synteny	CmoCh10G005270
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589799.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-58

98.29

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQC
        WTKLNWTGVEQDKC QC
Subjt:  WTKLNWTGVEQDKCGQC

KAG7023470.1 hypothetical protein SDJN02_14495 [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-59

98.31

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCGQCW

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]

3.3e-61

100

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWTGVEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]

1.2e-55

95.76

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR     KLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWTGVEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]

6.0e-55

93.22

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPH+AAQALTRRSVLCLYTSNHETLLASNPSLERSLL+EADEDDKLDGSAREAKRRLDERLRTQRKSRKF     N
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWT VEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B9W3 uncharacterized protein LOC103487385 isoform X1

4.4e-43

74.8

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN
        MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE LL SNPS++R LL+EA  +D+LDG AREAKRRLDERL RTQRKS    R+  
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN

Query:  WTKLNWTKLNWTGVEQDKCGQCW
          K +W KLNW GVE+DKCGQCW
Subjt:  WTKLNWTKLNWTGVEQDKCGQCW

A0A5A7U973 Putative E3 ubiquitin-protein ligase RHY1A

6.3e-42

73.98

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN
        MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE LL SNPS++R LL+EA  +D+LDG AREAKRRLDERL RTQRKS    R+  
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN

Query:  WTKLNWTKLNWTGVEQDKCGQCW
          K +W KLNW GVE+DK GQCW
Subjt:  WTKLNWTKLNWTGVEQDKCGQCW

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X1

1.6e-61

100

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWTGVEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

A0A6J1E765 uncharacterized protein LOC111430042 isoform X2

5.9e-56

95.76

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR     KLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTKLNWTGVEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X1

5.5e-54

93.22

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKL GSAREAKRRLDERLRTQ KSRKF     N
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCGQCW
        WTK NWTGVEQDKCGQCW
Subjt:  WTKLNWTGVEQDKCGQCW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G15580.1 RING/U-box superfamily protein

1.6e-13

47.06

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETLLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+  A     ERS+  ++   D D+KLDG+A+EAK+RL++RLR   ++
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETLLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLRTQRKS

Query:  RK
        R+
Subjt:  RK

AT2G15580.2 RING/U-box superfamily protein

5.5e-14

46.96

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETLLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLR--TQR
        MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+  A     ERS+  ++   D D+KLDG+A+EAK+RL++RLR   + 
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETLLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLR--TQR

Query:  KSRKFNWTK-LNWTK
         S K   TK +NW+K
Subjt:  KSRKFNWTK-LNWTK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATC
TGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATCGAGGCGGATGAAGACGATAAACTGGATGGAAGTG
CGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAG
CAAGACAAGTGCGGCCAGTGCTGGTGA

mRNA sequence

Show/hide mRNA sequence

GTAATTTCATGGCACCTTCGCGCCTCCTTCCGCGCACTTTCCTCCTCCTTCCAGTGCCGATGGAGTCAATGCAATCAATCTGTACTTAATCACTTCTCTCTCCGCCTCCT
CAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAGGTTTCCAAAGTTTCTCCAATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATG
TCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCTCCTCGCTTCAA
ATCCATCTCTGGAAAGAAGCCTGTTAATCGAGGCGGATGAAGACGATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGG
AAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAGCAAGACAAGTGCGGCCAGTGCTGGTGAAGAACACGACTTCATTTCAG
TGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACAC
GGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATTCATTAATTATTTATGAATCTATCAATTGTATGTTGGATGATGAAATGGATGATGAAACCGCTAATTTA
GAGAATGATTTCAAAGAATACTCTCTCAATTGGTGTGAGGTTTTTTGGGTTGGAATACTCTCTATTGGTGTGAGACTTTTTTGGGGAGCCTAAAGCAAAGTCATGAGAGC
TTATACTCGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACACGATGTCGTACCATTGTGGAGAGTCGTGTTCATCTAACATAACAATATCAT
AC

Protein sequence

Show/hide protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTKLNWTGVE
QDKCGQCW

CmoCh10G005270 (gene) of Cucurbita moschata (Rifu) v1 genome