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CmoCh10G005680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G005680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationCmo_Chr10:2581263..2583173
RNA-Seq ExpressionCmoCh10G005680
SyntenyCmoCh10G005680
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587887.1 hypothetical protein SDJN03_16452, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1179.55Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
        MSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
KAG6589833.1 hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sororia]8.9e-19100Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
KAG7023503.1 hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma]8.9e-19100Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]2.3e-1179.55Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
        MSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]1.6e-1282.22Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        MSMNKEDDKISWPHV  HFCLCYKH+KLIDDKSRIK F I D D+
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein2.1e-1073.33Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X11.3e-1063.46Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKALEGLVY
        MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+     ++
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKALEGLVY
A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X22.1e-1073.33Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like1.1e-1179.55Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
        MSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
A0A6J1I9W9 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like5.6e-1177.27Show/hide
Query:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
        M MN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Subjt:  MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein1.3e-0447.22Show/hide
Query:  ISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK
        ISW HV  HFCLCY+  +L++DK+ I+   + D D+
Subjt:  ISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACA
GTTTGAAATCATAGATGTTGATAAGGCACTGGAAGGTCTTGTCTACCTAAAGTTACAAGTCACTTACAAGGTAAGGCAGACCCACAAAGGAAGATCTAATTGTGTAGTAA
AGCTAATATTTCGCATTTCCTCTCCTAATCAACCTCTGAAATGCTAA
mRNA sequenceShow/hide mRNA sequence
CGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATC
TTCAAAAATCAATACCTTCTTCGATTCATAACTCTAATTCTCCATTATTCGTCTTTCTAGTCTCTGAAATTTTGAGTTCAGGTCTATTCATGTCTCGTATTGAGCCCTAT
GTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGCGTAGA
AAGTCAGGACCTATGGTCCTAGGTGCGAGTTGCAAGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATG
ACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGAT
AAGGCACTGGAAGGTCTTGTCTACCTAAAGTTACAAGTCACTTACAAGGTAAGGCAGACCCACAAAGGAAGATCTAATTGTGTAGTAAAGCTAATATTTCGCATTTCCTC
TCCTAATCAACCTCTGAAATGCTAA
Protein sequenceShow/hide protein sequence
MSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKALEGLVYLKLQVTYKVRQTHKGRSNCVVKLIFRISSPNQPLKC