CuGenDBv2

Gene ID	CmoCh10G005860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein
Genome location	Cmo_Chr10:2667108..2669502
RNA-Seq Expression	CmoCh10G005860
Synteny	CmoCh10G005860
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-47

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE PSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

3.2e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

XP_022960589.1 uncharacterized protein LOC111461324 [Cucurbita moschata]

2.7e-48

100

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

XP_022987917.1 uncharacterized protein LOC111485318 [Cucurbita maxima]

5.1e-47

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE PSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTML GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

5.0e-42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASE P P LF  SEVKQE+LPSHSSRTGLASL+PQKHEPTML+GWRMGLASILLKK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CT08 Ribosomal protein

3.5e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASE PSP LF  SEVKQEILPS+S RTGLASL+PQKHEPT + GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

1.6e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

A0A6J1HBF8 Ribosomal protein

1.3e-48

100

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

A0A6J1I4R0 Ribosomal protein

4.5e-41

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTV+RRGRVY+YCSSNPKHKQRQGLST ASE PSP LF  SEVK++ILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

2.5e-47

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
        MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE PSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTML GWRMGLASILLKKHN
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

1.2e-09

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

1.2e-09

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.5e-09

73.68

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

3.1e-10

78.95

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVRASVKKMC+ CR ++RRGRV V CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

1.5e-09

73.68

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

5.3e-26

63.46

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE--KPSPHLFPSSEVKQEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILL
        MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A E   PSP LF      QE+  LP      GLASLL ++  PT   GWR GLASIL 
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE--KPSPHLFPSSEVKQEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILL

Query:  KKHN
        K+ N
Subjt:  KKHN

AT5G20180.2 Ribosomal protein L36

5.3e-26

63.46

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE--KPSPHLFPSSEVKQEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILL
        MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A E   PSP LF      QE+  LP      GLASLL ++  PT   GWR GLASIL 
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE--KPSPHLFPSSEVKQEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILL

Query:  KKHN
        K+ N
Subjt:  KKHN

ATCG00760.1 ribosomal protein L36

1.0e-08

68.42

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Query:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MK+RASV+K+CE CR ++RRGR+ V C SNP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCA
GGGCCTATCAACATCTGCTAGTGAAAAACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTC
TCCTCCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAG

mRNA sequence

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TTAATTACCTTACAAAATGCATTTAATTAATTTACATACGTAATCTATTTCTAATAATTTATTTCACCAATCCAAGGTATTGTGTTCATCTTAGCTTTACGCCGTCGCTT
CCGAGTCCAAGGGATTTGGCCATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAA
TCCCAAACACAAGCAACGCCAGGGCCTATCAACATCTGCTAGTGAAAAACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCT
CACGAACAGGTCTGGCTTCTCTCCTCCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAG
TCCACGATTACAAACATCTCGATTTCTGCGGGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCTGCTGCTCTGAGTTTTGTTCTGTTTG
AGTTGGTTCTGATATTTAGAATGGCAGGACGAGCTGTTACATTGAGCCGGCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTATT
ATGTTGGAGATTAGAACATGACTTGCAATCCTTAATTTCCTTCTAAATAATCCTCAAATCCATCAACATATGATGAATCAAGTTGTATGCTAACAAGTTAAGAAAAGTTT
GAATTCTATTTTAGTTTCATTTTCCA

Protein sequence

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MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

CmoCh10G005860 (gene) of Cucurbita moschata (Rifu) v1 genome