CuGenDBv2

Gene ID	CmoCh10G006800
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA methyltransferase
Genome location	Cmo_Chr10:3104426..3106096
RNA-Seq Expression	CmoCh10G006800
Synteny	CmoCh10G006800
Gene Ontology terms	GO:0001510 - RNA methylation (biological process) GO:0008171 - O-methyltransferase activity (molecular function) GO:0008173 - RNA methyltransferase activity (molecular function)
InterPro domains	IPR010675 - RNA methyltransferase bin3, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022987833.1 probable RNA methyltransferase At5g51130 isoform X2 [Cucurbita maxima]

2.6e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

XP_022987834.1 probable RNA methyltransferase At5g51130 isoform X3 [Cucurbita maxima]

2.6e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

XP_022987835.1 probable RNA methyltransferase At5g51130 isoform X4 [Cucurbita maxima]

2.6e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

XP_022987906.1 probable RNA methyltransferase At5g51130 [Cucurbita maxima]

9.0e-33

81.93

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Query:  MLGSGIKVWSFKDRDRSFYKYFSSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        M GS I VWSF+DR RSFYK+FSSKEHDLHTVVS Q Q FIFS YPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  MLGSGIKVWSFKDRDRSFYKYFSSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

XP_023516349.1 probable RNA methyltransferase At5g51130 isoform X4 [Cucurbita pepo subsp. pepo]

3.4e-24

92.98

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1JBF8 RNA methyltransferase

1.2e-19

76.92

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIH NWGD          WRLL P G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG

A0A6J1JFN8 RNA methyltransferase

4.4e-33

81.93

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Query:  MLGSGIKVWSFKDRDRSFYKYFSSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        M GS I VWSF+DR RSFYK+FSSKEHDLHTVVS Q Q FIFS YPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  MLGSGIKVWSFKDRDRSFYKYFSSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

A0A6J1JHX9 RNA methyltransferase

1.3e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

A0A6J1JJY3 RNA methyltransferase

1.3e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

A0A6J1JKK2 RNA methyltransferase

1.3e-24

88.52

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG
        SSKEHDLHT VS QQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDV WRLLPP G   G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAG

SwissProt top hits

e value

%identity

Alignment

Q6NPC9 Probable RNA methyltransferase At5g51130

2.2e-10

46.15

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG
        S++  DL  +VS Q++NF+ ++   +  YDTILCLSV KW+H NWGD          WRLL P G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG

Arabidopsis top hits

e value

%identity

Alignment

AT5G51130.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

1.6e-11

46.15

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Query:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG
        S++  DL  +VS Q++NF+ ++   +  YDTILCLSV KW+H NWGD          WRLL P G
Subjt:  SSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVD--------WRLLPPAG

Sequences

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CDS sequence

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mRNA sequence

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ATGTTGGGAAGCGGGATAAAGGTTTGGAGCTTCAAAGATAGAGACAGAAGCTTCTACAAGTATTTCTCTTCCAAAGAACATGATCTTCATACCGTTGTTTCCGTCCAACA
GCAGAATTTTATATTTAGTCAATATCCACCTGAGAAGCACTATGATACAATTCTTTGTTTGAGTGTAGCAAAGTGGATTCATCAAAACTGGGGAGATGTTGATTGGAGAC
TGCTTCCTCCGGCAGGGTGGCCGGCAGGGTGGCATTCTTGTTTTGGAGCCTCAACCTTGAAAGTCTTATGAAGCCAACTATAGTGTTTCCGAGAAGTATAAAGTGGAGGG
TATTCATAGTAGAGGTTAAATGGTAGAGCACCTCCACATACTTTGTGTATTGGTTGTCGCGACGAAGTTAGTCATTTTTCAACGACAGTTTGAATCTATAGGAAAGCGTG
CAGTATCAAAAGGCTCCTCAGTCCCAAGATTTCACCGATCAAGCAAATGGGAAAGCAAGTTTTATATGAAACATGCATCCTAGTAAAAACGGGCCATCTATAACATTCTG
GTGGCAGTACCCCGTTG

Protein sequence

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MLGSGIKVWSFKDRDRSFYKYFSSKEHDLHTVVSVQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVDWRLLPPAGWPAGWHSCFGASTLKVL

CmoCh10G006800 (gene) of Cucurbita moschata (Rifu) v1 genome