; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G006810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G006810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA methyltransferase
Genome locationCmo_Chr10:3109443..3110100
RNA-Seq ExpressionCmoCh10G006810
SyntenyCmoCh10G006810
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0008171 - O-methyltransferase activity (molecular function)
GO:0008173 - RNA methyltransferase activity (molecular function)
InterPro domainsIPR010675 - RNA methyltransferase bin3, C-terminal
IPR039772 - RNA methyltransferase Bin3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022987833.1 probable RNA methyltransferase At5g51130 isoform X2 [Cucurbita maxima]1.3e-3796.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

XP_022987834.1 probable RNA methyltransferase At5g51130 isoform X3 [Cucurbita maxima]1.3e-3796.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

XP_022987835.1 probable RNA methyltransferase At5g51130 isoform X4 [Cucurbita maxima]1.3e-3796.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

XP_022987906.1 probable RNA methyltransferase At5g51130 [Cucurbita maxima]5.9e-4693.81Show/hide
Query:  MVWSFEDRCRSFYKHFSSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        MVWSFEDR RSFYKHFSSKEHD HTVVSFQ Q FIFS YPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  MVWSFEDRCRSFYKHFSSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

XP_023516349.1 probable RNA methyltransferase At5g51130 isoform X4 [Cucurbita pepo subsp. pepo]2.9e-3792.86Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPP----GGRQGGILVLEPPWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPP    GGRQGGILVLEPPWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPP----GGRQGGILVLEPPWKSYEANYSVSE

TrEMBL top hitse value%identityAlignment
A0A6J1JBF8 RNA methyltransferase2.4e-2977.89Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIH NWGD G        WRLL P    GGILVLEP PWKSYEANYSVSE   KNF
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF

A0A6J1JFN8 RNA methyltransferase2.9e-4693.81Show/hide
Query:  MVWSFEDRCRSFYKHFSSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        MVWSFEDR RSFYKHFSSKEHD HTVVSFQ Q FIFS YPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  MVWSFEDRCRSFYKHFSSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

A0A6J1JHX9 RNA methyltransferase6.4e-3896.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

A0A6J1JJY3 RNA methyltransferase6.4e-3896.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

A0A6J1JKK2 RNA methyltransferase6.4e-3896.3Show/hide
Query:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        SSKEHD HT VSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP PWKSYEANYSVSE
Subjt:  SSKEHD-HTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

SwissProt top hitse value%identityAlignment
A3KQ55 7SK snRNA methylphosphate capping enzyme1.0e-0837.65Show/hide
Query:  VSFQQQNFIFSQ----YPPEKHYDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF
        V+F + N++           + YD ILCLSV KW+H NWGD G    +  +    R GG+ +LEP PW SY     ++E   KN+
Subjt:  VSFQQQNFIFSQ----YPPEKHYDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF

Q6NPC9 Probable RNA methyltransferase At5g511304.6e-1755Show/hide
Query:  VVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        +VSFQ++NF+ ++   +  YDTILCLSV KW+H NWGD G        WRLL P    GGI V+EP PWKSYE N  VSE
Subjt:  VVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSE

Q7L2J0 7SK snRNA methylphosphate capping enzyme3.5e-0949.21Show/hide
Query:  YDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF
        YD +LCLS+ KW+H NWGD G    +R +    R GGILVLEP PW SY    +++E   KN+
Subjt:  YDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF

Q8K3A9 7SK snRNA methylphosphate capping enzyme7.8e-0949.21Show/hide
Query:  YDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF
        YD +LC S+ KW+H NWGD G    +R +    R GGILVLEP PW SY    S++E   KN+
Subjt:  YDTILCLSVAKWIHQNWGDVG----WRLLPPGGRQGGILVLEP-PWKSYEANYSVSEV--KNF

Q9U2R0 Probable RNA methyltransferase Y17G7B.181.4e-0534.74Show/hide
Query:  KHFSSKEHDHTVVSFQQQNFIFSQYPP----EKHYDTILCLSVAKWIHQNWGDVGWR--------LLPPGGRQGGILVLEP-PWKSYEANYSVSE
        + FS+K  D+  + F+++N++          +  +D IL LS+ KWIH NWGD G R         L PGGR    L++EP  + SY+    +SE
Subjt:  KHFSSKEHDHTVVSFQQQNFIFSQYPP----EKHYDTILCLSVAKWIHQNWGDVGWR--------LLPPGGRQGGILVLEP-PWKSYEANYSVSE

Arabidopsis top hitse value%identityAlignment
AT5G51130.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein3.3e-1855Show/hide
Query:  VVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSE
        +VSFQ++NF+ ++   +  YDTILCLSV KW+H NWGD G        WRLL P    GGI V+EP PWKSYE N  VSE
Subjt:  VVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVG--------WRLLPPGGRQGGILVLEP-PWKSYEANYSVSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTGGAGCTTCGAAGATAGATGCAGAAGCTTCTACAAGCATTTCTCTTCCAAAGAACATGATCATACCGTTGTTTCCTTCCAACAGCAGAATTTTATATTTAGTCA
ATATCCACCCGAGAAGCACTATGATACAATTCTTTGTTTGAGTGTAGCAAAGTGGATTCATCAAAACTGGGGAGATGTTGGTTGGAGACTGCTTCCTCCGGGTGGCCGGC
AGGGTGGCATTCTTGTTTTGGAGCCTCCTTGGAAGTCTTATGAAGCCAACTATAGTGTTTCCGAGGTAAAAAATTTCATGCATCCAAATTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTGGAGCTTCGAAGATAGATGCAGAAGCTTCTACAAGCATTTCTCTTCCAAAGAACATGATCATACCGTTGTTTCCTTCCAACAGCAGAATTTTATATTTAGTCA
ATATCCACCCGAGAAGCACTATGATACAATTCTTTGTTTGAGTGTAGCAAAGTGGATTCATCAAAACTGGGGAGATGTTGGTTGGAGACTGCTTCCTCCGGGTGGCCGGC
AGGGTGGCATTCTTGTTTTGGAGCCTCCTTGGAAGTCTTATGAAGCCAACTATAGTGTTTCCGAGGTAAAAAATTTCATGCATCCAAATTGTTAA
Protein sequenceShow/hide protein sequence
MVWSFEDRCRSFYKHFSSKEHDHTVVSFQQQNFIFSQYPPEKHYDTILCLSVAKWIHQNWGDVGWRLLPPGGRQGGILVLEPPWKSYEANYSVSEVKNFMHPNC