; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G007560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G007560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S16
Genome locationCmo_Chr10:3503414..3505756
RNA-Seq ExpressionCmoCh10G007560
SyntenyCmoCh10G007560
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590008.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.5e-67100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        RVVDPLSGRIVSPEKPTNDSSRKDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

KAG7023670.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-6799.22Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        RVVDPLSGRIVSPEKPTNDSS KDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]1.0e-6393.8Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        R VDPLSGR V+PEKPT+DSS KDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

XP_022960937.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]1.5e-67100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        RVVDPLSGRIVSPEKPTNDSSRKDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

XP_023516386.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]8.3e-6697.67Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFRSGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        RVVDPLSGRIVSPEKPT+DSS KDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

TrEMBL top hitse value%identityAlignment
A0A5D3CDW9 30S ribosomal protein S161.4e-5886.92Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+PMQRILFR+G+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPE-KPTNDSSRKDGNADS
        R VDPLSGR V+PE KPT+ S+ + G+ADS
Subjt:  RVVDPLSGRIVSPE-KPTNDSSRKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial4.9e-6493.8Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        R VDPLSGR V+PEKPT+DSS KDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like3.3e-6090Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDS-SRKDGNADS
        R VDPLSGR  +P+K T+DS S KDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDS-SRKDGNADS

A0A6J1H8S5 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like7.3e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS
        RVVDPLSGRIVSPEKPTNDSSRKDGNADS
Subjt:  RVVDPLSGRIVSPEKPTNDSSRKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like3.3e-6090Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPTNDS-SRKDGNADS
        R VDPLSGR  +P+K T+DS S KDG+ADS
Subjt:  RVVDPLSGRIVSPEKPTNDS-SRKDGNADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S167.9e-1952.44Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGV
        M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+WLSVGAQP++ + R L  +GV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGV

A8LMC0 30S ribosomal protein S167.9e-1951.19Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P++ + R+L  + VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLP

O65686 30S ribosomal protein S16-1, chloroplastic3.1e-3152.21Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ ++ +LFR+G++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  -RVVDPLSGRIVS
         + V P++G I++
Subjt:  -RVVDPLSGRIVS

Q5LNF2 30S ribosomal protein S167.9e-1951.81Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ ++ + R+L  +GV+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial5.8e-5475.76Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+P+QR+LFRSG+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPT---NDSSRKDGNADS
        R VDP++GR V  E  T   ND+  K+ + ++
Subjt:  RVVDPLSGRIVSPEKPT---NDSSRKDGNADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 162.2e-3252.21Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ ++ +LFR+G++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  -RVVDPLSGRIVS
         + V P++G I++
Subjt:  -RVVDPLSGRIVS

AT5G56940.1 Ribosomal protein S16 family protein4.1e-5575.76Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+P+QR+LFRSG+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT

Query:  RVVDPLSGRIVSPEKPT---NDSSRKDGNADS
        R VDP++GR V  E  T   ND+  K+ + ++
Subjt:  RVVDPLSGRIVSPEKPT---NDSSRKDGNADS

ATCG00050.1 ribosomal protein S161.1e-0733.33Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGV
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  ++G+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCGAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGTTCTCCCCGGGACGGCAAGCATCTGGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGACTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGAACCCATGC
AACGTATTCTTTTTAGATCAGGGGTACTTCCACCCCCTCCAATGGTTGCAATGGCGCGTAAAGGTGGACCACGTGATACTCGTGTTGTTGATCCTCTGAGCGGACGCATC
GTGTCTCCAGAGAAGCCAACTAATGATTCTAGTAGGAAAGATGGCAATGCTGATTCGTAA
mRNA sequenceShow/hide mRNA sequence
GTCATTTCAGTTTGGCGAATTTGCAAGATTTTTGCAGGGTTTTACCAGCTCGAAAATGGTGGTTCGAATTCGATTGTCGAGATTTGGTTGTAAGAACAAGCCGTTTTACA
GGGTGATGGCTGCCGATAGCCGTTCTCCCCGGGACGGCAAGCATCTGGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGACTTAAT
TTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGAACCCATGCAACGTATTCTTTTTAGATCAGGGGTACTTCCACCCCCTCCAATGGTTGCAATGGC
GCGTAAAGGTGGACCACGTGATACTCGTGTTGTTGATCCTCTGAGCGGACGCATCGTGTCTCCAGAGAAGCCAACTAATGATTCTAGTAGGAAAGATGGCAATGCTGATT
CGTAATTTTCTTTTAGAAAAATCTCTAGAATTTGACACAAAAGTCGAATGAACCTAGACTCGGTTGGGCACGGGTTCGGAATCATAAACCCTAGAGTTCTGAAATCCATA
AAGTTGATGATCGGCTGGAAGTATGAACTCGTGTTTCTAAAGCTTATGTTTAGAAATGTAAGGTTGAG
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRI
VSPEKPTNDSSRKDGNADS