; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G007800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G007800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRep-A_N domain-containing protein
Genome locationCmo_Chr10:3622585..3623518
RNA-Seq ExpressionCmoCh10G007800
SyntenyCmoCh10G007800
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD44309.1 TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera]6.8e-2247.98Show/hide
Query:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRT-ATSLPLDVGAAAMALRDLEEEEAGNGLKKA--WLDSLL
        +TAP +  +T PPA MLSKKF  +GE PGPAASATSGIT++AVRAAAV+PV AFS  DDRT + +L LD   A++AL DL+    G GLKKA     SLL
Subjt:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRT-ATSLPLDVGAAAMALRDLEEEEAGNGLKKA--WLDSLL

Query:  WVALVNGRASETVEVEAID--MIRKL-------CEFPELG-------ILVSEVGQGSRKAVERRKLGRFWESS
        W+A VNG A ET EV+AI   + +K+       CE    G       +++  V +G  ++++R    R WE S
Subjt:  WVALVNGRASETVEVEAID--MIRKL-------CEFPELG-------ILVSEVGQGSRKAVERRKLGRFWESS

KAA0055792.1 Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa]3.7e-3675.86Show/hide
Query:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVA
        +TAPN+ATTT PPAA+LSKKFF++G+TP PAASATSGITIDA RAAAV P  AFSF DDRTAT LPL++GAAAM LRDL+E   GNGLKKA L+S LWVA
Subjt:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVA

Query:  LVNGRASETVEVEAID
         VNG+A ET EVEAID
Subjt:  LVNGRASETVEVEAID

KAB5553081.1 hypothetical protein DKX38_010392 [Salix brachista]2.0e-2154.61Show/hide
Query:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLP-LDVGAAAMALRDLEEEEAGNGLK
        RLTGSKLETP TAP +AT+T PPAAMLSKK   DG+ PGPAASATSGITI+AV AAAVSPV AFSFK+  T+   P LD      A+  L+     +GL+
Subjt:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLP-LDVGAAAMALRDLEEEEAGNGLK

Query:  KAW----LDSLLWVALVNGRASETVEVEAIDMIRKLCEFPE
        K W      +L W A V+G   ET  + A   I  LC F E
Subjt:  KAW----LDSLLWVALVNGRASETVEVEAIDMIRKLCEFPE

KAG6590026.1 hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sororia]2.0e-82100Show/hide
Query:  MATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGR
        MATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGR
Subjt:  MATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGR

Query:  ASETVEVEAIDMIRKLCEFPELGILVSEVGQGSRKAVERRKLGRFWESSKSSSLSDVATSLCLIGG
        ASETVEVEAIDMIRKLCEFPELGILVSEVGQGSRKAVERRKLGRFWESSKSSSLSDVATSLCLIGG
Subjt:  ASETVEVEAIDMIRKLCEFPELGILVSEVGQGSRKAVERRKLGRFWESSKSSSLSDVATSLCLIGG

OWM77286.1 hypothetical protein CDL15_Pgr028923 [Punica granatum]7.5e-2157.14Show/hide
Query:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKK
        RLTGSKL TPITAP +  +T PPA +L +KF  +G+TP PAASATSGITI+AVRAAAVSPVMAFS ++  T ++ P D  A    L    +  AG+GLKK
Subjt:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKK

Query:  AWLDSL-LWVALVNGRASETVEVEAI
             L    A+VNG A ET EVEAI
Subjt:  AWLDSL-LWVALVNGRASETVEVEAI

TrEMBL top hitse value%identityAlignment
A0A218WXK4 Rep-A_N domain-containing protein3.6e-2157.14Show/hide
Query:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKK
        RLTGSKL TPITAP +  +T PPA +L +KF  +G+TP PAASATSGITI+AVRAAAVSPVMAFS ++  T ++ P D  A    L    +  AG+GLKK
Subjt:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKK

Query:  AWLDSL-LWVALVNGRASETVEVEAI
             L    A+VNG A ET EVEAI
Subjt:  AWLDSL-LWVALVNGRASETVEVEAI

A0A498HYV1 Rep-A_N domain-containing protein2.4e-2060.32Show/hide
Query:  SKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAA-AMALRDLEEEEAGNGLKK---
        SKL+TP TAP + T T PPAA+LSKKFF +GETP  AASATSGITI+AV AAAV PV AFSF +  T  SLPLD  AA A A   L    +G+GLKK   
Subjt:  SKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAA-AMALRDLEEEEAGNGLKK---

Query:  -AWLDSLLWVALVNGRASETVEVEAI
          W+  L WVALVNG A  T  V+AI
Subjt:  -AWLDSLLWVALVNGRASETVEVEAI

A0A5A7UIW0 Replication protein A 70 kDa DNA-binding subunit1.8e-3675.86Show/hide
Query:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVA
        +TAPN+ATTT PPAA+LSKKFF++G+TP PAASATSGITIDA RAAAV P  AFSF DDRTAT LPL++GAAAM LRDL+E   GNGLKKA L+S LWVA
Subjt:  ITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVA

Query:  LVNGRASETVEVEAID
         VNG+A ET EVEAID
Subjt:  LVNGRASETVEVEAID

A0A5N5MFU5 PABS domain-containing protein9.6e-2254.61Show/hide
Query:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLP-LDVGAAAMALRDLEEEEAGNGLK
        RLTGSKLETP TAP +AT+T PPAAMLSKK   DG+ PGPAASATSGITI+AV AAAVSPV AFSFK+  T+   P LD      A+  L+     +GL+
Subjt:  RLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLP-LDVGAAAMALRDLEEEEAGNGLK

Query:  KAW----LDSLLWVALVNGRASETVEVEAIDMIRKLCEFPE
        K W      +L W A V+G   ET  + A   I  LC F E
Subjt:  KAW----LDSLLWVALVNGRASETVEVEAIDMIRKLCEFPE

A0A7J7G758 Replication protein A subunit1.4e-2053.91Show/hide
Query:  QPRLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGL
        +P LTGSKL TP T P M  +T PPA MLSKKF  +GETP PAASATSGIT++AV AAAV+PV  FSF +  T+    +       AL  L     G+GL
Subjt:  QPRLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRDLEEEEAGNGL

Query:  KK-AWLDSLLWVALVNGRASETVEVEAI
        KK A L +L WVA V+G A++  EVEA+
Subjt:  KK-AWLDSLLWVALVNGRASETVEVEAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGATGAAAGCGCCATGGATGAATGGAATATTAAACAGAAACAAAGAATTACAACTCAACCACGCTTGACCGGATCGAAGTTGGAGACGCCTATCACAGCCCCCAA
TATGGCCACCACCACAGTTCCACCGGCAGCAATGCTGAGCAAGAAGTTCTTCAGCGACGGTGAGACTCCAGGTCCTGCAGCCTCTGCAACCTCCGGAATTACCATCGACG
CCGTCAGAGCTGCGGCGGTTAGTCCAGTGATGGCCTTCTCCTTCAAGGACGATCGGACTGCGACGAGCCTCCCGCTAGATGTCGGCGCGGCGGCGATGGCCTTGCGAGAC
CTCGAAGAAGAAGAAGCAGGCAATGGATTGAAGAAGGCGTGGTTGGACAGTCTCTTGTGGGTGGCGTTAGTCAATGGCAGGGCCAGTGAAACTGTAGAAGTGGAAGCCAT
TGATATGATTCGAAAGCTCTGCGAATTTCCGGAATTGGGGATTTTGGTTTCGGAAGTGGGCCAAGGAAGTAGAAAAGCGGTGGAGAGGCGGAAATTGGGGAGATTTTGGG
AGAGCTCGAAATCTTCATCTCTATCCGACGTGGCAACTTCTTTATGCCTTATTGGCGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGATGAAAGCGCCATGGATGAATGGAATATTAAACAGAAACAAAGAATTACAACTCAACCACGCTTGACCGGATCGAAGTTGGAGACGCCTATCACAGCCCCCAA
TATGGCCACCACCACAGTTCCACCGGCAGCAATGCTGAGCAAGAAGTTCTTCAGCGACGGTGAGACTCCAGGTCCTGCAGCCTCTGCAACCTCCGGAATTACCATCGACG
CCGTCAGAGCTGCGGCGGTTAGTCCAGTGATGGCCTTCTCCTTCAAGGACGATCGGACTGCGACGAGCCTCCCGCTAGATGTCGGCGCGGCGGCGATGGCCTTGCGAGAC
CTCGAAGAAGAAGAAGCAGGCAATGGATTGAAGAAGGCGTGGTTGGACAGTCTCTTGTGGGTGGCGTTAGTCAATGGCAGGGCCAGTGAAACTGTAGAAGTGGAAGCCAT
TGATATGATTCGAAAGCTCTGCGAATTTCCGGAATTGGGGATTTTGGTTTCGGAAGTGGGCCAAGGAAGTAGAAAAGCGGTGGAGAGGCGGAAATTGGGGAGATTTTGGG
AGAGCTCGAAATCTTCATCTCTATCCGACGTGGCAACTTCTTTATGCCTTATTGGCGGATAGCCTTATCCTATTCGTCGTTTTTTTGTTTTATTTGTCTTTAAAGTGGAA
GCCATTGATTAGATGTTACTTTTATTCTCTCTCTTTTTTTTTTTCTTAGTTTTATTTTAGATTAAATTACCAATTTAGTTTCTTAAATTTGAACTGTGTACCTACCAACT
CTCTGAAATTCTAAAACTATCCTAAAAATTTAGTTTCAG
Protein sequenceShow/hide protein sequence
MYDESAMDEWNIKQKQRITTQPRLTGSKLETPITAPNMATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSLPLDVGAAAMALRD
LEEEEAGNGLKKAWLDSLLWVALVNGRASETVEVEAIDMIRKLCEFPELGILVSEVGQGSRKAVERRKLGRFWESSKSSSLSDVATSLCLIGG