CuGenDBv2

Gene ID	CmoCh10G007810
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II PsbX
Genome location	Cmo_Chr10:3622954..3623334
RNA-Seq Expression	CmoCh10G007810
Synteny	CmoCh10G007810
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-52

97.62

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTS+G LVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]

3.2e-54

100

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

XP_022987287.1 uncharacterized protein LOC111484883 [Cucurbita maxima]

2.1e-50

94.44

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VSLALPLT ATHKRLSNHAFFNPLPAS SSR RKAIAAAPTS+GRLVAVRSSLKEKAITG++AAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

XP_023516825.1 uncharacterized protein LOC111780616 [Cucurbita pepo subsp. pepo]

2.1e-50

96.03

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTSTVSLALPLT+ATHKRLSNHAFFNPLPASSSSRSRKAIA  PTS+GRLVAVRSSLK KAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]

1.3e-42

84.8

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS +S+ALPLT ATHK LSN AFFNPLP   S +SRKAIAAAP S+GR+VAVRSSLKEKA+ G+TAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGV+NFDPVKR
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWL3 Uncharacterized protein

1.2e-38

78.4

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS +S+ALP T+AT K LSN AFFNPLP   S +SRK IA AP S+GR++AVRSS KEKA+ G++AAALTASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGV+NFDPVKR
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKR

A0A1S3BRD2 uncharacterized protein LOC103492356

1.3e-40

81.6

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VS+ALP T+ATHK LSN AFFNPLP   S +SRK IAAAP S+GR+VAVRSSLKEKA+ G+TAAAL ASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKR
        AAGG VVVAI GAVIGV+NFDPVKR
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKR

A0A6J1H8G2 uncharacterized protein LOC111461452

1.5e-54

100

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

A0A6J1HV97 uncharacterized protein LOC111467755

5.4e-39

80.95

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MAS   VS+ALPLT A+ KRLSN AFFNPLP    SRSRKAI AAP    RLV V SSLKEKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGG VV+AILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

A0A6J1J9Y5 uncharacterized protein LOC111484883

1.0e-50

94.44

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VSLALPLT ATHKRLSNHAFFNPLPAS SSR RKAIAAAPTS+GRLVAVRSSLKEKAITG++AAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKRG
        AAGGTVVVAILGAVIGVSNFDPVKRG
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

4.8e-24

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Query:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS +SL  PL      +  +  F  PLP   S    KA+ A    + RL  V++   +KA+TG++AAALTASMVIPE+AEAAG G+SPSLKNFLLSI
Subjt:  MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGTVVVAILGAVIGVSNFDPVKR
        A+GG V+  I+G V+GVSNFDPVKR
Subjt:  AAGGTVVVAILGAVIGVSNFDPVKR

Sequences

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CDS sequence

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ATGGCTTCCACTTCTACAGTTTCACTGGCCCTGCCATTGACTAACGCCACCCACAAGAGACTGTCCAACCACGCCTTCTTCAATCCATTGCCTGCTTCTTCTTCTTCGAG
GTCTCGCAAGGCCATCGCCGCCGCGCCGACATCTAGCGGGAGGCTCGTCGCAGTCCGATCGTCCTTGAAGGAGAAGGCCATCACTGGACTAACCGCCGCAGCTCTGACGG
CGTCGATGGTAATTCCGGAGGTTGCAGAGGCTGCAGGACCTGGAGTCTCACCGTCGCTGAAGAACTTCTTGCTCAGCATTGCTGCCGGTGGAACTGTGGTGGTGGCCATA
TTGGGGGCTGTGATAGGCGTCTCCAACTTCGATCCGGTCAAGCGTGGTTGA

mRNA sequence

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Protein sequence

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MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAI
LGAVIGVSNFDPVKRG

CmoCh10G007810 (gene) of Cucurbita moschata (Rifu) v1 genome