CuGenDBv2

Gene ID	CmoCh10G008050
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Methylthioribose-1-phosphate isomerase
Genome location	Cmo_Chr10:3742918..3745236
RNA-Seq Expression	CmoCh10G008050
Synteny	CmoCh10G008050
Gene Ontology terms	GO:0019284 - L-methionine salvage from S-adenosylmethionine (biological process) GO:0019509 - L-methionine salvage from methylthioadenosine (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity (molecular function)
InterPro domains	IPR027363 - Methylthioribose-1-phosphate isomerase, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7023709.1 hypothetical protein SDJN02_14735, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-13

73.44

Show/hide

Query:  QRKLPLESVYLDIKDATDGRSLFERQRRRLRREPASLVDDMLFC---RYKNVVDHIFGNSWLSF
        QRK+ + S Y         RSLFERQRRRLRREPASLVDDMLFC   RYKNVVDHIFGNSWLSF
Subjt:  QRKLPLESVYLDIKDATDGRSLFERQRRRLRREPASLVDDMLFC---RYKNVVDHIFGNSWLSF

KAG7023709.1 hypothetical protein SDJN02_14735, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-05

87.5

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQ
        MG DSK GGEVGAD+SL SICYKKGSLRLLDQ
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQ

KAG7023709.1 hypothetical protein SDJN02_14735, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-12

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M  DS  GG+VGAD+SL++ICY +GSLRLLDQRKLPLE+VYLDIK+A DG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

XP_008450940.1 PREDICTED: methylthioribose-1-phosphate isomerase [Cucumis melo]

1.4e-14

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS  GGEVG D+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

XP_011660028.1 methylthioribose-1-phosphate isomerase [Cucumis sativus]

1.4e-14

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS  GGEVG D+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

XP_038880122.1 methylthioribose-1-phosphate isomerase [Benincasa hispida]

1.4e-14

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M L+S  GGEVGAD+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

TrEMBL top hits

e value

%identity

Alignment

A0A059CMG0 Methylthioribose-1-phosphate isomerase

9.1e-12

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS      GAD+SL+SICY++GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

A0A0A0LZL4 Methylthioribose-1-phosphate isomerase

6.7e-15

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS  GGEVG D+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

A0A1S3BPT0 Methylthioribose-1-phosphate isomerase

6.7e-15

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS  GGEVG D+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

A0A5D3CHZ0 Methylthioribose-1-phosphate isomerase

6.7e-15

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M LDS  GGEVG D+SL+SICYK+GSLRLLDQRKLPLE+VYLDIKDATDG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

A0A6J1D2V9 Methylthioribose-1-phosphate isomerase

2.4e-12

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        M  DS  GG+VGAD+SL++ICY +GSLRLLDQRKLPLE+VYLDIK+A DG
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

SwissProt top hits

e value

%identity

Alignment

B9HCR2 Methylthioribose-1-phosphate isomerase

8.2e-10

75.68

Show/hide

Query:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        D++L+SICY +GSL+LLDQRKLPLE+ YLDIKDA+DG
Subjt:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

B9RR88 Methylthioribose-1-phosphate isomerase

6.3e-10

55.77

Show/hide

Query:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRS
        M  +S +G E+  D +L+SICY +GSL+LLDQRKLPLE+ +LDI++++DG S
Subjt:  MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRS

D7TCD0 Methylthioribose-1-phosphate isomerase

6.9e-09

Show/hide

Query:  SLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        SL+SICYK+GSL+LLDQRKLPLE+VYL+IK A DG
Subjt:  SLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

Q948X8 Methylthioribose-1-phosphate isomerase

1.5e-08

70.27

Show/hide

Query:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG
        D +L SICY +GSL+LLDQRKLPLE++YLDI+D  DG
Subjt:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDG

Q9ZUG4 Methylthioribose-1-phosphate isomerase

1.4e-09

64.29

Show/hide

Query:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRSLFE
        D++L++ICYK GSL+LLDQRKLPLE++YL+I+DA+DG S  +
Subjt:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRSLFE

Arabidopsis top hits

e value

%identity

Alignment

AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein

9.9e-11

64.29

Show/hide

Query:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRSLFE
        D++L++ICYK GSL+LLDQRKLPLE++YL+I+DA+DG S  +
Subjt:  DSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRSLFE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTTGGATTCGAAAACTGGCGGCGAAGTCGGAGCGGATAGCTCTCTTCGGTCCATCTGTTACAAGAAGGGCTCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTTT
GGAATCTGTTTACCTGGACATCAAGGATGCAACAGATGGACGGAGTTTGTTCGAAAGACAGCGGAGACGTCTACGTAGAGAACCGGCCTCCCTTGTGGACGACATGCTAT
TCTGCAGATACAAGAATGTAGTTGATCATATCTTTGGCAATTCATGGCTCTCTTTCTGA

mRNA sequence

Show/hide mRNA sequence

TTCTTTTTTCCGTTTAATTTCTTGTAAGCATAATGGGTTTGGATTCGAAAACTGGCGGCGAAGTCGGAGCGGATAGCTCTCTTCGGTCCATCTGTTACAAGAAGGGCTCC
TTGCGGCTGCTCGATCAGAGGAAGCTCCCTTTGGAATCTGTTTACCTGGACATCAAGGATGCAACAGATGGACGGAGTTTGTTCGAAAGACAGCGGAGACGTCTACGTAG
AGAACCGGCCTCCCTTGTGGACGACATGCTATTCTGCAGATACAAGAATGTAGTTGATCATATCTTTGGCAATTCATGGCTCTCTTTCTGA

Protein sequence

Show/hide protein sequence

MGLDSKTGGEVGADSSLRSICYKKGSLRLLDQRKLPLESVYLDIKDATDGRSLFERQRRRLRREPASLVDDMLFCRYKNVVDHIFGNSWLSF

CmoCh10G008050 (gene) of Cucurbita moschata (Rifu) v1 genome