; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G009140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G009140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL30A
Genome locationCmo_Chr10:4514579..4517931
RNA-Seq ExpressionCmoCh10G009140
SyntenyCmoCh10G009140
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022961135.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata]1.6e-12798.38Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
        VLLGRELTVVYAEENRKKPSDMRTRERG    SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR

Query:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

XP_022961137.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata]2.8e-129100Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

XP_022988197.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxima]6.5e-12697.57Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
        VLLGRELTVVYAEENRKKPSDMRTRERG    SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPR YSRSASPPDR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR

Query:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        RNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

XP_022988199.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxima]1.2e-12799.18Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPR YSRSASPPDRRNSR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        ERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

XP_023516498.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo]7.0e-12899.59Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG
        MRGRSYTPSPPRGYGRRGRSPSPRGRY GGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG

Query:  CVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNS
        CVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNS
Subjt:  CVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNS

Query:  RERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        RERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  RERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

TrEMBL top hitse value%identityAlignment
A0A0A0LZX6 RRM domain-containing protein2.1e-11486.26Show/hide
Query:  MPSVARFLDCGSLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGF
        + S ARFLD G LSLVAV MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRDLPTSLLVRNL  DCRPEDLRRPFGQFGAIKDIYLPKDY+TGEPRGFGF
Subjt:  MPSVARFLDCGSLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGF

Query:  VQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPP
        VQYVDPADAADAKH MDGCVLLGRELTVV+AEENRKKPSDMR RERGSGR++DRRRSPP   RSPRYSRSPA R  RYSRSPAPRHARSRSRSYD AS P
Subjt:  VQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPP

Query:  PKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        PK RAYSRS SP DR +SRERSFPRQ SRGRS+SRSPRLDGSRSRS SP +  SRSPSP+RG
Subjt:  PKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

A0A6J1H9C6 serine/arginine-rich SC35-like splicing factor SCL33 isoform X21.4e-129100Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

A0A6J1HB72 serine/arginine-rich SC35-like splicing factor SCL33 isoform X17.5e-12898.38Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
        VLLGRELTVVYAEENRKKPSDMRTRERG    SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR

Query:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

A0A6J1JKW9 serine/arginine-rich SC35-like splicing factor SCL33 isoform X25.8e-12899.18Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPR YSRSASPPDRRNSR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        ERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

A0A6J1JLK2 serine/arginine-rich SC35-like splicing factor SCL33 isoform X13.2e-12697.57Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR
        VLLGRELTVVYAEENRKKPSDMRTRERG    SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPR YSRSASPPDR
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERG----SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDR

Query:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
        RNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG
Subjt:  RNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

SwissProt top hitse value%identityAlignment
O75494 Serine/arginine-rich splicing factor 105.3e-2240.45Show/hide
Query:  TSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDR
        TSL VRN+  D R EDLRR FG++G I D+Y+P D++T  PRGF +VQ+ D  DA DA H +D   + GR++ + +A+ +RK P+ M+ +E         
Subjt:  TSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDR

Query:  RRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD----------NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRS-PRLD---
         R+   SSR   Y R       R SRS +    RSRSRS+D          N+ P  +PR  SRS S  DR   R RSF R  S  RS S+S P+ +   
Subjt:  RRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD----------NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRS-PRLD---

Query:  --GSRSRSPSPARGRSRSPS
           SRS S +  RG S++ S
Subjt:  --GSRSRSPSPARGRSRSPS

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL284.5e-2945.2Show/hide
Query:  LVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYG---GRGRDLPTS----------LLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFV
        +   + R RSY+P P      R RSP PR R G    R R+ P+S          LL+RNL  D RP DLR  F +FG +KDIYLP++Y+TGEPRGFGFV
Subjt:  LVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYG---GRGRDLPTS----------LLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFV

Query:  QYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHAR-SRSRSYDNASPP
        +Y    DAA+A  +M+  V+ GRE+ +V+AEENRK P +MRT    SGR  D +R+  RS R  R  RS    H+R SRSP  R +R S+ R  D  SP 
Subjt:  QYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHAR-SRSRSYDNASPP

Query:  PKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFS--RSPRLDGSRSRSPS
         + R+ SRS  P + R  + R+  R P   R  +  RS  L  SRSRS S
Subjt:  PKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFS--RSPRLDGSRSRSPS

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL305.3e-3041.03Show/hide
Query:  RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADA
        R Y+P   SPP RGYG RGRSP P          G  GGR      SLLVRN+  DCRPE+LR PF +FG ++D+Y+P+DY++G+PRGF FV++VD  DA
Subjt:  RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADA

Query:  ADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRA---
         +A+  M+     GRE+TVV A E+RK+P +MR + R       R R P  S  RS   SRS +   +R  R P+   +R RSRSY   SP P+ R    
Subjt:  ADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRA---

Query:  -------YSR----------SASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSR--SRSPSPARGRSRSPSP
               YSR          +A+ PDR  + +     +P     +    R  G R  SRSPS +R RS   SP
Subjt:  -------YSR----------SASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSR--SRSPSPARGRSRSPSP

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A4.6e-7466.94Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG
        MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLR DCR EDLRRPF QFG +KDIYLP+DY+TG+PRGFGF+Q++DPADAA+AKHQMDG
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG

Query:  CVLLGRELTVVYAEENRKKPSDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRR
         +LLGRELTVV+AEENRKKP++MRTR+RG  S RF DRRRSP      PRYSRSP PR  R S        RSRSR Y++   PP  R  SRS SP DRR
Subjt:  CVLLGRELTVVYAEENRKKPSDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRR

Query:  NSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLR
          +E          RS+SRSP  +GSR RS SP R +S S SP R
Subjt:  NSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLR

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL332.9e-7667.46Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG 
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        +LLGRELTVV+AEENRKKP++MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SPPP+ R + RS SP + R   
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR
         RS+ R P    SRGRS   +P    SRS SPSP R       RSRSPSP R
Subjt:  ERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 332.0e-7767.46Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG 
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        +LLGRELTVV+AEENRKKP++MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SPPP+ R + RS SP + R   
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR
         RS+ R P    SRGRS   +P    SRS SPSP R       RSRSPSP R
Subjt:  ERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR

AT1G55310.2 SC35-like splicing factor 339.2e-7868.33Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG 
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGC

Query:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR
        +LLGRELTVV+AEENRKKP++MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SPPP+ R + RS SP + R   
Subjt:  VLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSR

Query:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP
                   RS+SRSP  DGSR RS +P RG+SRS SP
Subjt:  ERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP

AT1G55310.3 SC35-like splicing factor 332.3e-7364.15Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTG------------EPRGFGFVQYVDPA
        MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG +KDIYLP+DY+TG            +PRGFGFVQ++DPA
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTG------------EPRGFGFVQYVDPA

Query:  DAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSG-RFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAY
        DAADAKH MDG +LLGRELTVV+AEENRKKP++MR RERG G RF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SPPP+ R +
Subjt:  DAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSG-RFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAY

Query:  SRSASPPDRRNSRERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR
         RS SP + R    RS+ R P    SRGRS   +P    SRS SPSP R       RSRSPSP R
Subjt:  SRSASPPDRRNSRERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG------RSRSPSPLR

AT3G13570.1 SC35-like splicing factor 30A3.3e-7566.94Show/hide
Query:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG
        MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLR DCR EDLRRPF QFG +KDIYLP+DY+TG+PRGFGF+Q++DPADAA+AKHQMDG
Subjt:  MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDG

Query:  CVLLGRELTVVYAEENRKKPSDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRR
         +LLGRELTVV+AEENRKKP++MRTR+RG  S RF DRRRSP      PRYSRSP PR  R S        RSRSR Y++   PP  R  SRS SP DRR
Subjt:  CVLLGRELTVVYAEENRKKPSDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRR

Query:  NSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLR
          +E          RS+SRSP  +GSR RS SP R +S S SP R
Subjt:  NSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLR

AT3G55460.1 SC35-like splicing factor 303.8e-3141.03Show/hide
Query:  RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADA
        R Y+P   SPP RGYG RGRSP P          G  GGR      SLLVRN+  DCRPE+LR PF +FG ++D+Y+P+DY++G+PRGF FV++VD  DA
Subjt:  RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADA

Query:  ADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRA---
         +A+  M+     GRE+TVV A E+RK+P +MR + R       R R P  S  RS   SRS +   +R  R P+   +R RSRSY   SP P+ R    
Subjt:  ADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRA---

Query:  -------YSR----------SASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSR--SRSPSPARGRSRSPSP
               YSR          +A+ PDR  + +     +P     +    R  G R  SRSPS +R RS   SP
Subjt:  -------YSR----------SASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSR--SRSPSPARGRSRSPSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGG
TCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGATCTTCGTAGAC
CATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGTTTCGTTCAATATGTAGATCCTGCTGATGCTGCA
GATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGG
AAGTGGACGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTC
CGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGGGCTTACTCGAGATCGGCGTCCCCACCTGACAGACGGAATAGTCGAGAG
AGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCC
AAGCCCATTGAGAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGG
TCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGATCTTCGTAGAC
CATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGTTTCGTTCAATATGTAGATCCTGCTGATGCTGCA
GATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGG
AAGTGGACGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTC
CGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGGGCTTACTCGAGATCGGCGTCCCCACCTGACAGACGGAATAGTCGAGAG
AGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCC
AAGCCCATTGAGAGGCTGAAGCCTGAGCATTCGCTGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGTCGAGAACAATTACAATGTACTATTGCCATTGCTTAGT
TTGATGTTTCCGCTATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTTGTTCTTAGGAATCTATGCGTTATCAAGATTTTGAGTTTTTTTTTTT
TTTTTCTTCTTTCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATTATCGACTTATTTAAATAATAAATAACGTAGTAAAATTATTAAAAAT
A
Protein sequenceShow/hide protein sequence
MPSVARFLDCGSLSLVAVQMRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAA
DAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSRE
RSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG