CuGenDBv2

Gene ID	CmoCh10G009170
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial-like
Genome location	Cmo_Chr10:4545306..4549146
RNA-Seq Expression	CmoCh10G009170
Synteny	CmoCh10G009170
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590149.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

4.7e-81

98.64

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSD EEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

6.1e-73

89.8

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SD EEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NK+EG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

XP_022961107.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

1.9e-82

100

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

XP_022988231.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

1.7e-78

95.92

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRD PLPPWSSSD EEFIAFNPVHGP LKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLL GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

XP_023515414.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo]

8.3e-78

95.92

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWE YKEFWSERFSILDNYSPFVQRDKPLPPWSSSD EEFI FNPVHGPALKTAREAVNFGL GTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

1.5e-72

88.44

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQR+KPLP WSSSD E FIA +PVHGP LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        S LAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWW NKNEG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

3.0e-73

89.8

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SD EEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NK+EG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

A0A6J1H994 succinate dehydrogenase subunit 6, mitochondrial-like

9.2e-83

100

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

7.3e-72

90.28

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SD EEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NK+E
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE

A0A6J1JGN4 succinate dehydrogenase subunit 6, mitochondrial-like

8.1e-79

95.92

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRD PLPPWSSSD EEFIAFNPVHGP LKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF
        SLL GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

1.0e-30

44.44

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Query:  KHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWT
        +H EG K  W++ FS LD +     RDKPLP W+ +D +EFIA +PV+GP LK  RE+  F L G ++G     G+A KYS++ HG  L+   G + G  
Subjt:  KHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWT

Query:  FGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGH
         G E+A HWYQLY+ D  GA ++F+ WW +K  G+
Subjt:  FGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGH

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

3.3e-53

68.35

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSD EEFIA +PVHGP LKTAREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

2.3e-54

68.35

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSD EEFIA +PVHGP LKTAREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNE

Sequences

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CDS sequence

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ATGGAACATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCG
CGACAAGCCACTTCCTCCATGGTCTAGCTCCGATGCCGAGGAATTTATTGCTTTCAACCCCGTCCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGTC
TTACAGGAACAGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGG
ACTTTTGGCCACGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCTCAAGTTAAGTTTATGGAGTGGTGGGGAAACAAGAACGAGGGACATTT
TTAA

mRNA sequence

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TGAAGAACGAGATTGCAGAGCTAGAACAGCTGAAGGATTCTGTTTTCAATCGGATTTGGTTTCTGAAATCTCATTCCTAATCTGTTTTTCGCCGGAAAAGTTATGGAACA
TTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCGCGACAAGC
CACTTCCTCCATGGTCTAGCTCCGATGCCGAGGAATTTATTGCTTTCAACCCCGTCCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGTCTTACAGGA
ACAGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGGACTTTTGG
CCACGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCTCAAGTTAAGTTTATGGAGTGGTGGGGAAACAAGAACGAGGGACATTTTTAAACTC
CGAGTTGCAGTTGAAGCAGGTACCACGCCGCTCCCATTTAAAATAAAAATGAATGTGCAACTTTGTTGAAATTCAATGGTTGATTGGTTTGTTTTGTGCTGAACTCTTCC
AACCCAAGTTGAGAAAAGGCCTGAATCCCTTGTTTTTTCCCCCAATATCCTCTGGAAATGATTGATTCATTTGCAAGCTGGTTAGGAATGTAGCCATCTTTAACGAGTAC
CTTGAATCGTGGGTGTTAAGGTCTGAAGCATCCATTATTGGTCCATAATGGATACGTACATCTGTCCTGTTGGAAAGAATTATTTGTGTGTCAATTTTGTGCTCAATCAA
GAATTGAACCAAATCAATAAGTTTTTGCAAAAGAAGAATCGAACAAATGACTACTTGGACACGACCAACCAGTTTAGTTCTACTTGTCTTATTGGGTTCATGAACCTAAG
AGGAAGAGCCTAGGGATTAAAGCCAAAAAGAGAGAGAGAAGACGAAAGGATGGCGTGTGTAGGTTGTTCGTTGTTCGTTGTAATGACATTGTTGTGTGAAGGTGAGGGAG
GCAACGAGGTGGAGGTACGACATATGACGTCGCTGCGTGGGAGGTGAGCAATCAACATGAGCACGAGGAGAGTGATAGGATGAGGCAAACATTTTCGAGACATACCGTAA
AAGTTAAGCCTACCACTAACAAATATTGACTTTTTTGGGCTTTTCTTCCTGAGCTTCCCCTCGATTCTAAAATGCATATGTTAGAGAGAGGTTTCTACACGGAATATTTC
GTTCCCGATCTAAAATCTCATATGTAGCATCTTTTTAAGTCCACTAATGTCTTGGATCATAAGTTCCAGATCTTCAAAGATTAGTAAGAATAACATTACAATATTCTTTT
GACCCAACTCTTCTTAAA

Protein sequence

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MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGW
TFGHEIANHWYQLYRVDTMGAQVKFMEWWGNKNEGHF

CmoCh10G009170 (gene) of Cucurbita moschata (Rifu) v1 genome