; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G009680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G009680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr10:4878085..4878903
RNA-Seq ExpressionCmoCh10G009680
SyntenyCmoCh10G009680
Gene Ontology termsNA
InterPro domainsIPR028919 - Viral movement protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588193.1 hypothetical protein SDJN03_16758, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3940.94Show/hide
Query:  RSCSSKFVDDHSLEDEEY--VEKG-NNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMNIG
        RS  SK    H+L+ +EY  VEKG ++L+ W +P +P  K+Y    K  LFT  ++ +  ++  EG     NGGG   L ++    +  + K Y  ++IG
Subjt:  RSCSSKFVDDHSLEDEEY--VEKG-NNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMNIG

Query:  LVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLK
        +VQIGVK +TR  P NA ++LC+RD R   ++DS++ MVE+ L DGP YFNVFPN+  SL  A  + ++L ++  V+ F+QL EG + IVV  R CYK+ 
Subjt:  LVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLK

Query:  QTKFGPEALLESPV-GKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWP
        +       LL++P  G+T+FFQT     +N     D  Q VT W++VQLP NWP
Subjt:  QTKFGPEALLESPV-GKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWP

KAG6590198.1 hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sororia]1.3e-14896.72Show/hide
Query:  MSLFFRSCSSKFVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMN
        MSLFFRSCSSKFVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMN
Subjt:  MSLFFRSCSSKFVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMN

Query:  IGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYK
        IGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLF+A LIMNVLSVH LVKGFDQLA+GSEPIVVSCRTCYK
Subjt:  IGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYK

Query:  LKQTKFGPEALLESPVGKTVFFQTQIVGKLN--GGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFPNGFKRLNG
        L QTKFGPEALLESPVGKTVFFQTQIVGKLN  GGGGGDVVQKVTQWDQVQLPSNWPPQLHIP+FPN FKRLNG
Subjt:  LKQTKFGPEALLESPVGKTVFFQTQIVGKLN--GGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFPNGFKRLNG

KGN66493.1 hypothetical protein Csa_007053 [Cucumis sativus]6.0e-9870.04Show/hide
Query:  MSLFFRSCSSK-FVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGK--FYS
        MSLFF+SCSSK FV DHSLE+EEYVEKG +LVKW MP VPIHK+YE + K   F F +K D SIR TEGQISFGN GGSFKLY Q PSSY ++ +  F++
Subjt:  MSLFFRSCSSK-FVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGK--FYS

Query:  VMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRT
         MNIGLVQIGVKT+T+KIP NASIILC+RDNRIEK+EDS++A+VESKLGDGPFYFNVFPN+N SLF +  I NVLSVH LVKG D++ +GS PIVV+CRT
Subjt:  VMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRT

Query:  CYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP
        CYKL Q  FG EAL+ESPVGKTVFFQ +I          DVVQKVT W+QVQLPS+WPP+LHIP  P
Subjt:  CYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP

KGN66494.1 hypothetical protein Csa_006902 [Cucumis sativus]1.0e-4446.15Show/hide
Query:  HSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPS-SYGQKGKFYSVMNIGLVQIGVKTITRK
        HSL+ EEY++KG NL+KW +P +P  K+Y    K   F F +  D  I+  E  +   NG   F+L    P     Q+ +FY+ +N+G++QIGVKT+T K
Subjt:  HSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPS-SYGQKGKFYSVMNIGLVQIGVKTITRK

Query:  IPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLES
        IPSNASIILCV D R +  EDSI+ +VESKL DGP +FN+FPN+   +F   L+ + + +  +V+GF+QL +G+ PI +  RTCYKL+ +   P AL+ES
Subjt:  IPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLES

Query:  PVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV
        P GKTVFFQT      N        QKV+QWD+V
Subjt:  PVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV

XP_038880673.1 uncharacterized protein LOC120072292 [Benincasa hispida]4.1e-3842Show/hide
Query:  SLFFRSCSSKF-VDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAP--SSYGQKGKFYSV
        +LF   CSS F    H+L+ EEY++KGNNL+KW +P VP  K+Y    K+  FTF +  D SI+  E ++S  NG  +F+L  + P  +S+    +FY+ 
Subjt:  SLFFRSCSSKF-VDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAP--SSYGQKGKFYSV

Query:  MNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTC
        +N+G++QIGVK +T KIPSNASIILCV D+R E  ED+I+ +VES L                                  GF+QL EG+ PI +  RTC
Subjt:  MNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTC

Query:  YKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV
        YKL+++   P ALLESP GKTV+FQT +            VQKV++WD+V
Subjt:  YKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV

TrEMBL top hitse value%identityAlignment
A0A0A0LXM3 Uncharacterized protein2.9e-9870.04Show/hide
Query:  MSLFFRSCSSK-FVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGK--FYS
        MSLFF+SCSSK FV DHSLE+EEYVEKG +LVKW MP VPIHK+YE + K   F F +K D SIR TEGQISFGN GGSFKLY Q PSSY ++ +  F++
Subjt:  MSLFFRSCSSK-FVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGK--FYS

Query:  VMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRT
         MNIGLVQIGVKT+T+KIP NASIILC+RDNRIEK+EDS++A+VESKLGDGPFYFNVFPN+N SLF +  I NVLSVH LVKG D++ +GS PIVV+CRT
Subjt:  VMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRT

Query:  CYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP
        CYKL Q  FG EAL+ESPVGKTVFFQ +I          DVVQKVT W+QVQLPS+WPP+LHIP  P
Subjt:  CYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP

A0A0A0LZS0 Uncharacterized protein4.8e-4546.15Show/hide
Query:  HSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPS-SYGQKGKFYSVMNIGLVQIGVKTITRK
        HSL+ EEY++KG NL+KW +P +P  K+Y    K   F F +  D  I+  E  +   NG   F+L    P     Q+ +FY+ +N+G++QIGVKT+T K
Subjt:  HSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPS-SYGQKGKFYSVMNIGLVQIGVKTITRK

Query:  IPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLES
        IPSNASIILCV D R +  EDSI+ +VESKL DGP +FN+FPN+   +F   L+ + + +  +V+GF+QL +G+ PI +  RTCYKL+ +   P AL+ES
Subjt:  IPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLES

Query:  PVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV
        P GKTVFFQT      N        QKV+QWD+V
Subjt:  PVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV

A0A0R0I8S4 Uncharacterized protein5.8e-2231.35Show/hide
Query:  HSLEDEE--YVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMNIGLVQIGVKTITR
        H+L DEE  + +   ++  W +P +P  +LY  +T K    F    D  I+  E  I  G   G  + +  + +S  +  + Y  ++IG VQ+ +K +  
Subjt:  HSLEDEE--YVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMNIGLVQIGVKTITR

Query:  KIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV-LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALL
         +  +A++++C+RD R  K EDS+I  VE+ LG GP YFN +PN   SL D  ++ ++ L++HF   G D + EGS P  +  R  YK+  T      LL
Subjt:  KIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV-LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALL

Query:  ESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP
        +   G+T  F T +  K N       ++++ +WD+V LP  W  +   P  P
Subjt:  ESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFP

A0A5A7U9X3 Polyprotein5.9e-3548.59Show/hide
Query:  NGGGSFKLYKQAP--SSYGQKGKFYSVMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV
        NG  +F+L    P  +S+ +K +F +++N+G++QIGVKT+T KI SNASIILCV D R +  EDSI+ +VE+KL DGP +FN+FPN+  SLF   L  ++
Subjt:  NGGGSFKLYKQAP--SSYGQKGKFYSVMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV

Query:  LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV
        + +  +V+GF+QL +G+ PI +  RTCYKL+ + F P AL+ESP GKTVFFQT              VQKV++WD+V
Subjt:  LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV

A0A5D3D5V1 Polyprotein7.0e-3649.15Show/hide
Query:  NGGGSFKLYKQAP--SSYGQKGKFYSVMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV
        NG  +F+L    P  +S+ +K +F +++N+G++QIGVKT+T KIPSNASIILCV D R +  EDSI+ +VE+KL DGP +FN+FPN+  SLF   L  ++
Subjt:  NGGGSFKLYKQAP--SSYGQKGKFYSVMNIGLVQIGVKTITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNV

Query:  LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV
        + +  +V+GF+QL +G+ PI +  RTCYKL+ + F P AL+ESP GKTVFFQT              VQKV++WD+V
Subjt:  LSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGDVVQKVTQWDQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCTTTTTCAGGTCATGCAGCTCCAAATTCGTCGACGATCATTCGTTAGAAGACGAAGAATACGTCGAAAAAGGCAACAACTTAGTGAAATGGACGATGCCAAA
CGTTCCAATCCACAAACTCTACGAACATCAAACGAAAAAAAAACTCTTCACGTTTTCTACAAAGATCGATCGCTCTATTCGAATCACCGAGGGTCAAATCAGCTTCGGAA
ATGGTGGAGGAAGCTTCAAATTGTATAAACAAGCTCCTTCAAGCTATGGTCAGAAGGGAAAATTCTATAGCGTTATGAACATAGGACTTGTTCAAATTGGTGTCAAAACC
ATTACAAGAAAAATTCCTTCAAACGCTTCTATAATTTTATGTGTTCGTGATAATAGAATTGAAAAAGTTGAAGATTCAATCATAGCTATGGTTGAATCCAAATTAGGGGA
TGGCCCATTTTACTTCAATGTTTTTCCAAACATGAATTTTTCTTTGTTTGATGCTGTATTGATCATGAATGTTTTGAGTGTTCATTTTTTGGTGAAAGGGTTTGATCAGC
TGGCAGAAGGGAGTGAGCCAATTGTGGTGTCATGTAGAACATGTTACAAGTTGAAGCAAACCAAGTTTGGACCAGAGGCTTTGCTTGAGAGTCCTGTTGGGAAAACTGTG
TTTTTTCAGACACAGATTGTTGGGAAGTTGAATGGTGGTGGTGGTGGTGATGTTGTTCAGAAGGTGACTCAATGGGATCAAGTTCAGCTGCCTTCTAATTGGCCTCCTCA
GCTGCATATACCCAGGTTTCCTAATGGGTTCAAGAGACTTAATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTCTTTTTCAGGTCATGCAGCTCCAAATTCGTCGACGATCATTCGTTAGAAGACGAAGAATACGTCGAAAAAGGCAACAACTTAGTGAAATGGACGATGCCAAA
CGTTCCAATCCACAAACTCTACGAACATCAAACGAAAAAAAAACTCTTCACGTTTTCTACAAAGATCGATCGCTCTATTCGAATCACCGAGGGTCAAATCAGCTTCGGAA
ATGGTGGAGGAAGCTTCAAATTGTATAAACAAGCTCCTTCAAGCTATGGTCAGAAGGGAAAATTCTATAGCGTTATGAACATAGGACTTGTTCAAATTGGTGTCAAAACC
ATTACAAGAAAAATTCCTTCAAACGCTTCTATAATTTTATGTGTTCGTGATAATAGAATTGAAAAAGTTGAAGATTCAATCATAGCTATGGTTGAATCCAAATTAGGGGA
TGGCCCATTTTACTTCAATGTTTTTCCAAACATGAATTTTTCTTTGTTTGATGCTGTATTGATCATGAATGTTTTGAGTGTTCATTTTTTGGTGAAAGGGTTTGATCAGC
TGGCAGAAGGGAGTGAGCCAATTGTGGTGTCATGTAGAACATGTTACAAGTTGAAGCAAACCAAGTTTGGACCAGAGGCTTTGCTTGAGAGTCCTGTTGGGAAAACTGTG
TTTTTTCAGACACAGATTGTTGGGAAGTTGAATGGTGGTGGTGGTGGTGATGTTGTTCAGAAGGTGACTCAATGGGATCAAGTTCAGCTGCCTTCTAATTGGCCTCCTCA
GCTGCATATACCCAGGTTTCCTAATGGGTTCAAGAGACTTAATGGTTGA
Protein sequenceShow/hide protein sequence
MSLFFRSCSSKFVDDHSLEDEEYVEKGNNLVKWTMPNVPIHKLYEHQTKKKLFTFSTKIDRSIRITEGQISFGNGGGSFKLYKQAPSSYGQKGKFYSVMNIGLVQIGVKT
ITRKIPSNASIILCVRDNRIEKVEDSIIAMVESKLGDGPFYFNVFPNMNFSLFDAVLIMNVLSVHFLVKGFDQLAEGSEPIVVSCRTCYKLKQTKFGPEALLESPVGKTV
FFQTQIVGKLNGGGGGDVVQKVTQWDQVQLPSNWPPQLHIPRFPNGFKRLNG