; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G009870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G009870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHistone H3.2
Genome locationCmo_Chr10:5002296..5007530
RNA-Seq ExpressionCmoCh10G009870
SyntenyCmoCh10G009870
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7400273.1 unnamed protein product [Spirodela intermedia]3.0e-1593.75Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI
        ATVPG NLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC VLAI
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI

KAF4350065.1 hypothetical protein G4B88_000326 [Cannabis sativa]1.0e-1590Show/hide
Query:  DRATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI
        ++ATVPGLNLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC V AI
Subjt:  DRATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI

KAF4359209.1 hypothetical protein F8388_005318 [Cannabis sativa]2.3e-1585.19Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFLQGIR
        ATVPGLNLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC V AI    +R
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFLQGIR

KAG5566234.1 hypothetical protein RHGRI_001992 [Rhododendron griersonianum]3.0e-1593.75Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI
        ATVPGLNLCGFFTPPVAGADF AALVA+CF GAFPPVDFLAVCFVLAI
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI

KAG7023864.1 hypothetical protein SDJN02_14891, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-4979.7Show/hide
Query:  MADPRSGLGRKPLEQSRKSLFGSVDEVLLINIIGEREERVGVSHKGTQRSHGAFA----------EYLAPVPFSKMPSGGKTAHKVPNPNQSQFTDHTHR
        MADPRSGLGRKPLEQSRKSLFGSVDEVLLINIIGEREERVGVSHKGTQRSHGAFA          E++A VPFSKMPSGGK AH+VPNPN+SQFTDHTHR
Subjt:  MADPRSGLGRKPLEQSRKSLFGSVDEVLLINIIGEREERVGVSHKGTQRSHGAFA----------EYLAPVPFSKMPSGGKTAHKVPNPNQSQFTDHTHR

Query:  KCKPTDGQREAIFGTRRGCYWSKQSESVNSKGG
        KCKPTD QR AIF TRRGCY S  + ++ SKGG
Subjt:  KCKPTDGQREAIFGTRRGCYWSKQSESVNSKGG

TrEMBL top hitse value%identityAlignment
A0A398AGU2 Uncharacterized protein7.1e-1590Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFL
        ATVPG NLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC V AI L
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFL

A0A7I8KR17 Hypothetical protein1.4e-1593.75Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI
        ATVPG NLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC VLAI
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI

A0A7J6DVD3 Uncharacterized protein4.9e-1690Show/hide
Query:  DRATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI
        ++ATVPGLNLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC V AI
Subjt:  DRATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAI

A0A7J6EMP6 Uncharacterized protein5.4e-1552.83Show/hide
Query:  KGGEKVRKNKRKDLYPQTTLPGTPRRLPEEPQRRCSETEDR-----------------ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAV
        K  E   K  +    P+T  P  P +  EE  +R +  EDR                 ATVPGL  CGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAV
Subjt:  KGGEKVRKNKRKDLYPQTTLPGTPRRLPEEPQRRCSETEDR-----------------ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAV

Query:  CFVLAI
        C V AI
Subjt:  CFVLAI

A0A7J6ENA3 Uncharacterized protein1.1e-1585.19Show/hide
Query:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFLQGIR
        ATVPGLNLCGFFTPPVAGADFLAALVA+CFLGAFPPVDFLAVC V AI    +R
Subjt:  ATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFLQGIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACCCAAGGAGTGGCTTAGGAAGAAAGCCTTTAGAACAGTCGAGAAAGAGTCTTTTTGGAAGCGTTGATGAGGTTTTATTGATTAACATAATTGGGGAGAGAGA
AGAGAGAGTTGGTGTGAGCCATAAAGGAACGCAACGCTCCCATGGAGCCTTTGCGGAATACTTAGCACCCGTGCCGTTTAGCAAAATGCCGAGTGGCGGGAAAACGGCTC
ACAAAGTCCCAAATCCCAACCAATCTCAATTCACAGACCACACTCACCGGAAGTGCAAGCCTACGGACGGCCAGAGAGAAGCCATTTTCGGTACCCGTCGTGGCTGTTAC
TGGTCAAAGCAATCTGAATCTGTGAACTCTAAAGGTGGAGAAAAGGTCCGAAAGAACAAGCGCAAAGATTTGTATCCTCAAACAACCCTACCAGGTACGCCTCGGCGGCT
TCCTGAAGAGCCGCAACGGCGCTGCTCTGAAACCGAAGATCGCGCCACCGTCCCTGGCCTGAATCTGTGCGGCTTCTTCACTCCTCCGGTCGCCGGAGCCGACTTCCTCG
CCGCCTTAGTCGCCAACTGCTTCCTAGGCGCCTTTCCTCCCGTCGATTTCCTTGCTGTTTGCTTTGTTCTCGCCATCTTCCTCCAAGGAATTCGATCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGACCCAAGGAGTGGCTTAGGAAGAAAGCCTTTAGAACAGTCGAGAAAGAGTCTTTTTGGAAGCGTTGATGAGGTTTTATTGATTAACATAATTGGGGAGAGAGA
AGAGAGAGTTGGTGTGAGCCATAAAGGAACGCAACGCTCCCATGGAGCCTTTGCGGAATACTTAGCACCCGTGCCGTTTAGCAAAATGCCGAGTGGCGGGAAAACGGCTC
ACAAAGTCCCAAATCCCAACCAATCTCAATTCACAGACCACACTCACCGGAAGTGCAAGCCTACGGACGGCCAGAGAGAAGCCATTTTCGGTACCCGTCGTGGCTGTTAC
TGGTCAAAGCAATCTGAATCTGTGAACTCTAAAGGTGGAGAAAAGGTCCGAAAGAACAAGCGCAAAGATTTGTATCCTCAAACAACCCTACCAGGTACGCCTCGGCGGCT
TCCTGAAGAGCCGCAACGGCGCTGCTCTGAAACCGAAGATCGCGCCACCGTCCCTGGCCTGAATCTGTGCGGCTTCTTCACTCCTCCGGTCGCCGGAGCCGACTTCCTCG
CCGCCTTAGTCGCCAACTGCTTCCTAGGCGCCTTTCCTCCCGTCGATTTCCTTGCTGTTTGCTTTGTTCTCGCCATCTTCCTCCAAGGAATTCGATCTGCTTGA
Protein sequenceShow/hide protein sequence
MADPRSGLGRKPLEQSRKSLFGSVDEVLLINIIGEREERVGVSHKGTQRSHGAFAEYLAPVPFSKMPSGGKTAHKVPNPNQSQFTDHTHRKCKPTDGQREAIFGTRRGCY
WSKQSESVNSKGGEKVRKNKRKDLYPQTTLPGTPRRLPEEPQRRCSETEDRATVPGLNLCGFFTPPVAGADFLAALVANCFLGAFPPVDFLAVCFVLAIFLQGIRSA