CuGenDBv2

Gene ID	CmoCh10G010310
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L30
Genome location	Cmo_Chr10:5424085..5425971
RNA-Seq Expression	CmoCh10G010310
Synteny	CmoCh10G010310
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590249.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-53

91.74

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIIDPGDSDIIKSLPGE
Subjt:  VCCLSIIDPGDSDIIKSLPGE

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]

2.6e-53

90.91

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIIDPGDSDIIKS+PGE
Subjt:  VCCLSIIDPGDSDIIKSLPGE

XP_022925483.1 60S ribosomal protein L30 [Cucurbita moschata]

7.6e-53

89.34

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKS+PG+S
Subjt:  VCCLSIIDPGDSDIIKSLPGES

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

5.3e-54

91.8

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKSLPGES
Subjt:  VCCLSIIDPGDSDIIKSLPGES

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

9.0e-54

90.98

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKS+PGES
Subjt:  VCCLSIIDPGDSDIIKSLPGES

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FM19 Ribosomal_L7Ae domain-containing protein

3.7e-53

89.26

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIIDPGDSDIIKS+PGE
Subjt:  VCCLSIIDPGDSDIIKSLPGE

A0A6J1DXV1 60S ribosomal protein L30

1.3e-53

90.91

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIIDPGDSDIIKS+PGE
Subjt:  VCCLSIIDPGDSDIIKSLPGE

A0A6J1H9H7 60S ribosomal protein L30-like

2.6e-54

91.8

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKSLPGES
Subjt:  VCCLSIIDPGDSDIIKSLPGES

A0A6J1HXQ4 60S ribosomal protein L30

3.7e-53

89.34

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKS+PG+S
Subjt:  VCCLSIIDPGDSDIIKSLPGES

A0A6J1JJ11 60S ribosomal protein L30-like

2.6e-54

91.8

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGES
        VCCLSIIDPGDSDIIKSLPGES
Subjt:  VCCLSIIDPGDSDIIKSLPGES

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

7.7e-48

77.69

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVA KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK           KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIIDPGDSDIIK+ PGE
Subjt:  VCCLSIIDPGDSDIIKSLPGE

O49884 60S ribosomal protein L30

3.2e-54

86.78

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYR
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSI+DPGDSDIIK+LPG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

Q8VZ19 60S ribosomal protein L30-2

5.9e-48

76.86

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKG          KLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        V CLSI+DPGDSDIIKS+PG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

Q9C8F7 Putative 60S ribosomal protein L30-1

1.5e-48

78.51

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKG          KLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        V CLSI+DPGDSDIIKSLPG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

Q9M5M6 60S ribosomal protein L30

3.3e-51

82.64

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KG          KLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        VCCLSIID GDSDIIKS+PG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.1e-49

78.51

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKG          KLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        V CLSI+DPGDSDIIKSLPG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.2e-49

76.86

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKG          KLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        V CLSI+DPGDSDIIKS+PG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

3.5e-48

76.03

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKG          KLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+R
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR

Query:  VCCLSIIDPGDSDIIKSLPGE
        V CLSI+DPGDSDIIK+LPG+
Subjt:  VCCLSIIDPGDSDIIKSLPGE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGAC
CTTGAGGAACTCTAAAGGTAATCTATTGATTTTGTTTTCCACTTTGTGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATG
CGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGC
GATTCGGATATCATCAAGAGCTTGCCTGGAGAAAGTTAG

mRNA sequence

Show/hide mRNA sequence

GGCTGTAGTTGAACAATCTCGGCGTGTTGAGCAGCAGCAGCTTCTAATCTTCCATCATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTC
GCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGACCTTGAGGAACTCTAAAGGTAATCTATTGATTTTGTTTTCCACTTTGTGTAAGCT
TATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAACGTAGACCTTG
GAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGCGATTCGGATATCATCAAGAGCTTGCCTGGAGAAAGTTAGGTTGCAGATCATAGA
TTTTTGTTTCAGAGTTTCATTTTAATCCACTTGATTTTGGGTTGTGCGTAGCGATATTTTGAACGAACGGTTTCATTATAAACTCTTTTATGTACGAGAATGCATTAATG
TCAGTTCAAATCTGTTCCTGGTTTGTATTCATAATATCAATCTTGTAAGGCATTTCAGACAAGTTTCATATCGTTAGTTTGGTTTCTAAATCTTCCCTGATTACAAAACA
AGCATGTCTCCAAATATGACGTTAGTTCATCTTTCCTTGGATAATGCATTAATGCCCG

Protein sequence

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MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGNLLILFSTLCKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
DSDIIKSLPGES

CmoCh10G010310 (gene) of Cucurbita moschata (Rifu) v1 genome