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CmoCh10G010480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G010480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr10:5532305..5535663
RNA-Seq ExpressionCmoCh10G010480
SyntenyCmoCh10G010480
Gene Ontology termsGO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR039525 - E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144098.1 E3 ubiquitin-protein ligase RZF1 [Cucumis sativus]8.2e-3445.45Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------
        SS G+DTHWC+QC H FWL+GE+IVCP+C GGF+EELN+  DET+QNDFNP   EDLST+VPPIFEA+                                
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------

Query:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                            +TPEGRSSQ  G   ++ QLSLNE R+PVPTPAS+S IEAMPTIKI QMH+
Subjt:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

XP_008451039.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]1.5e-3545.5Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------
        SS G+DTHWCYQC+H FWL+GE++VCP+CNGGF+EELN+  DET+QNDFNP   EDLST+VPPIFEA+                                
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------

Query:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN
                                            +TPEGRSSQ  G   ++ QLSLNE R+PVPTPAS+S IEAMPTIKI QMH+ +
Subjt:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN

XP_022147727.1 probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Momordica charantia]9.1e-3342.05Show/hide
Query:  LGYLRTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV------------------------
        + + R  SS G+DTHWCYQC+H FWL GE+IVCPYCNGGFIEELN+  D T+QND N   + ED S++VPPIFEA+                        
Subjt:  LGYLRTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV------------------------

Query:  --------------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                                    + PEGRSSQ  G   +  Q+++NE RDPVP PAS+SSIEAMPTIKI QMH+
Subjt:  --------------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

XP_022147728.1 probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Momordica charantia]3.4e-3243.09Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV-------------------------------
        SS G+DTHWCYQC+H FWL GE+IVCPYCNGGFIEELN+  D T+QND N   + ED S++VPPIFEA+                               
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV-------------------------------

Query:  -------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                             + PEGRSSQ  G   +  Q+++NE RDPVP PAS+SSIEAMPTIKI QMH+
Subjt:  -------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

XP_038880729.1 E3 ubiquitin-protein ligase RZF1-like [Benincasa hispida]5.7e-3545.16Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFEAV---------------------------------
        SS G+DTHWCYQC+H FWL+GE++VCPYCNGGF+EE N+  DET+Q+DFNP  EDLST VPPIFEA+                                 
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFEAV---------------------------------

Query:  -----------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                           +TPEGRSSQ  G   ++ QLSL+EHR+PVPTP S+SSI+AMPTIKI QMH+
Subjt:  -----------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

TrEMBL top hitse value%identityAlignment
A0A0A0LZS8 RING-type E3 ubiquitin transferase1.8e-3445.26Show/hide
Query:  RTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV-----------------------------
        R  SS G+DTHWC+QC H FWL+GE+IVCP+C GGF+EELN+  DET+QNDFNP   EDLST+VPPIFEA+                             
Subjt:  RTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV-----------------------------

Query:  ---------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                               +TPEGRSSQ  G   ++ QLSLNE R+PVPTPAS+S IEAMPTIKI QMH+
Subjt:  ---------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

A0A1S3BQN3 RING-type E3 ubiquitin transferase7.2e-3645.5Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------
        SS G+DTHWCYQC+H FWL+GE++VCP+CNGGF+EELN+  DET+QNDFNP   EDLST+VPPIFEA+                                
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------

Query:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN
                                            +TPEGRSSQ  G   ++ QLSLNE R+PVPTPAS+S IEAMPTIKI QMH+ +
Subjt:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN

A0A5A7UIL6 RING-type E3 ubiquitin transferase7.2e-3645.5Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------
        SS G+DTHWCYQC+H FWL+GE++VCP+CNGGF+EELN+  DET+QNDFNP   EDLST+VPPIFEA+                                
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPD-AEDLSTEVPPIFEAV--------------------------------

Query:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN
                                            +TPEGRSSQ  G   ++ QLSLNE R+PVPTPAS+S IEAMPTIKI QMH+ +
Subjt:  ------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISN

A0A6J1D235 RING-type E3 ubiquitin transferase1.7e-3243.09Show/hide
Query:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV-------------------------------
        SS G+DTHWCYQC+H FWL GE+IVCPYCNGGFIEELN+  D T+QND N   + ED S++VPPIFEA+                               
Subjt:  SSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV-------------------------------

Query:  -------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                             + PEGRSSQ  G   +  Q+++NE RDPVP PAS+SSIEAMPTIKI QMH+
Subjt:  -------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

A0A6J1D364 RING-type E3 ubiquitin transferase4.4e-3342.05Show/hide
Query:  LGYLRTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV------------------------
        + + R  SS G+DTHWCYQC+H FWL GE+IVCPYCNGGFIEELN+  D T+QND N   + ED S++VPPIFEA+                        
Subjt:  LGYLRTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFN--PDAEDLSTEVPPIFEAV------------------------

Query:  --------------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI
                                                    + PEGRSSQ  G   +  Q+++NE RDPVP PAS+SSIEAMPTIKI QMH+
Subjt:  --------------------------------------------ITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHI

SwissProt top hitse value%identityAlignment
O22197 Probable E3 ubiquitin-protein ligase RHC1A1.7e-0550Show/hide
Query:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR
        S   +THWC++C     L+G+E VC YC GGF+EEL+ A+
Subjt:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR

O22283 Probable E3 ubiquitin-protein ligase RHC2A2.4e-0430.21Show/hide
Query:  THWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDA---EDLSTEVPPIFEAVITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTP
        ++WCY CS F W++ + I CP C+GGF+E +    D T  + F           T  PP   +  TP                 S + H D  PTP
Subjt:  THWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDA---EDLSTEVPPIFEAVITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTP

Q94AK4 E3 ubiquitin-protein ligase RZF11.7e-0535Show/hide
Query:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE
        +THWC++C    WL   + VC YC GGF+EE+          D  P       E  P F+
Subjt:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE

Q9SNB6 E3 ubiquitin-protein ligase RDUF12.4e-0440.91Show/hide
Query:  THWCYQCSHFF--WLNGEE---IVCPYCNGGFIEELNNARDETL
        ++WCY C+ F   W + +    ++CPYCNGGFIEE+ ++ + T+
Subjt:  THWCYQCSHFF--WLNGEE---IVCPYCNGGFIEELNNARDETL

Arabidopsis top hitse value%identityAlignment
AT2G40830.1 RING-H2 finger C1A1.2e-0650Show/hide
Query:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR
        S   +THWC++C     L+G+E VC YC GGF+EEL+ A+
Subjt:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR

AT2G40830.2 RING-H2 finger C1A1.2e-0650Show/hide
Query:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR
        S   +THWC++C     L+G+E VC YC GGF+EEL+ A+
Subjt:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR

AT2G40830.3 RING-H2 finger C1A1.2e-0650Show/hide
Query:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR
        S   +THWC++C     L+G+E VC YC GGF+EEL+ A+
Subjt:  SDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNAR

AT3G56580.1 RING/U-box superfamily protein1.2e-0635Show/hide
Query:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE
        +THWC++C    WL   + VC YC GGF+EE+          D  P       E  P F+
Subjt:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE

AT3G56580.2 RING/U-box superfamily protein1.2e-0635Show/hide
Query:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE
        +THWC++C    WL   + VC YC GGF+EE+          D  P       E  P F+
Subjt:  DTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAEDLSTEVPPIFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACATTCGGCTAAGTATTCTCTTGGAAAATCGATCCGTAGAGACGGGGGAAGCTCGTCTAATAGCACAATAGCGCGAGCTTCAAAAGGGAATTGGGTTAAAATTCC
TGAACTGGGACGTGGTGGCAACGGCAAAGTTAAACTTGGTTATTTGAGGACGAAGTCGTCTGATGGCGACGACACCCATTGGTGCTATCAATGCAGCCATTTTTTCTGGC
TTAATGGAGAAGAAATAGTTTGCCCTTATTGTAATGGTGGTTTCATTGAAGAACTTAACAATGCACGTGATGAAACGCTTCAAAATGACTTTAATCCAGACGCAGAAGAT
CTTTCAACCGAAGTGCCTCCAATTTTTGAAGCCGTCATCACTCCAGAAGGTAGATCGAGTCAGTGTTTCGGGACTGGAAGAGTTAGCTGCCAGCTTTCCTTGAATGAACA
CAGGGATCCAGTTCCAACTCCTGCTTCTAACTCTTCTATAGAAGCAATGCCTACAATCAAGATTGGCCAAATGCACATTTCCAACACAATACTTGCCCGGTATGTCGGCT
CGAGCTGCCTCAGCAGGATAGCAGACACGGTCGGGGAGGGAACAGCAGCAGCCATAGTGAATTCCCAAATGAGCGAGAGATTACTCAACAAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACATTCGGCTAAGTATTCTCTTGGAAAATCGATCCGTAGAGACGGGGGAAGCTCGTCTAATAGCACAATAGCGCGAGCTTCAAAAGGGAATTGGGTTAAAATTCC
TGAACTGGGACGTGGTGGCAACGGCAAAGTTAAACTTGGTTATTTGAGGACGAAGTCGTCTGATGGCGACGACACCCATTGGTGCTATCAATGCAGCCATTTTTTCTGGC
TTAATGGAGAAGAAATAGTTTGCCCTTATTGTAATGGTGGTTTCATTGAAGAACTTAACAATGCACGTGATGAAACGCTTCAAAATGACTTTAATCCAGACGCAGAAGAT
CTTTCAACCGAAGTGCCTCCAATTTTTGAAGCCGTCATCACTCCAGAAGGTAGATCGAGTCAGTGTTTCGGGACTGGAAGAGTTAGCTGCCAGCTTTCCTTGAATGAACA
CAGGGATCCAGTTCCAACTCCTGCTTCTAACTCTTCTATAGAAGCAATGCCTACAATCAAGATTGGCCAAATGCACATTTCCAACACAATACTTGCCCGGTATGTCGGCT
CGAGCTGCCTCAGCAGGATAGCAGACACGGTCGGGGAGGGAACAGCAGCAGCCATAGTGAATTCCCAAATGAGCGAGAGATTACTCAACAAAATCTGA
Protein sequenceShow/hide protein sequence
MSHSAKYSLGKSIRRDGGSSSNSTIARASKGNWVKIPELGRGGNGKVKLGYLRTKSSDGDDTHWCYQCSHFFWLNGEEIVCPYCNGGFIEELNNARDETLQNDFNPDAED
LSTEVPPIFEAVITPEGRSSQCFGTGRVSCQLSLNEHRDPVPTPASNSSIEAMPTIKIGQMHISNTILARYVGSSCLSRIADTVGEGTAAAIVNSQMSERLLNKI