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CmoCh10G010560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G010560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionInactive protein RESTRICTED TEV MOVEMENT 2-like
Genome locationCmo_Chr10:5611705..5613355
RNA-Seq ExpressionCmoCh10G010560
SyntenyCmoCh10G010560
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR002068 - Alpha crystallin/Hsp20 domain
IPR008978 - HSP20-like chaperone
IPR045045 - Small heat shock protein RTM2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590270.1 Inactive protein RESTRICTED TEV MOVEMENT 2, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2669.07Show/hide
Query:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        MD SSK FQDI PQI  ++YP  HVLTV ++DFT NDLKVQVT T KLRI+GERR+  GK +RF KEIDIPAD D  KISAKLE GIL V QP K S
Subjt:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

KAG6590271.1 Heat shock protein beta-11, partial [Cucurbita argyrosperma subsp. sororia]6.0e-3985.57Show/hide
Query:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        MDPSS +FQDI PQI  KYYPG HVLT+ VQDFTSNDLKVQVTC LKLRISG+RRVNCGKCI FRKEIDIPADVDI+KISAK+EGGILSVRQP KAS
Subjt:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

KAG7033445.1 hypothetical protein SDJN02_07501, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-4086.6Show/hide
Query:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        MDPSS +FQ+ITPQI  KYYPG HVLT+ VQDFTSNDLKVQVTC LKLRISG+RRVNCGKCI FRKEIDIPADVDI+KISAK+EGGILSVRQPMKAS
Subjt:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

XP_022960897.1 heat shock protein beta-11-like [Cucurbita moschata]1.2e-60100Show/hide
Query:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
        MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
Subjt:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD

Query:  CPINVLSCPINDCPKT
        CPINVLSCPINDCPKT
Subjt:  CPINVLSCPINDCPKT

XP_023533468.1 uncharacterized protein LOC111795344 [Cucurbita pepo subsp. pepo]3.0e-3884.85Show/hide
Query:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        MSMD SSK F DI PQI CKYYPG HVLTVAVQDFTSNDLKVQVT TLKLRI+G+RR+NCGKCI FRKEIDIPADVDI KISAK E GIL VRQPMKAS
Subjt:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

TrEMBL top hitse value%identityAlignment
A0A1S3BQ02 pollen-specific leucine-rich repeat extensin-like protein 12.7e-2157.14Show/hide
Query:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
        MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLR+SGER++  GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S 
Subjt:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD

Query:  CPINV
           N+
Subjt:  CPINV

A0A5A7UKP9 Inactive protein RESTRICTED TEV MOVEMENT 2-like2.7e-2157.14Show/hide
Query:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
        MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLR+SGER++  GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S 
Subjt:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD

Query:  CPINV
           N+
Subjt:  CPINV

A0A5D3CF67 Inactive protein RESTRICTED TEV MOVEMENT 2-like1.2e-2158.1Show/hide
Query:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
        MDPSS  K FQ+  P+    ++P  HVL V +  F SN LKVQVT T KLRISGER++  GK +RF KEIDIPAD D  KISAKLE GIL V+QP K S 
Subjt:  MDPSS--KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD

Query:  CPINV
           N+
Subjt:  CPINV

A0A6J1H8P0 heat shock protein beta-11-like6.0e-61100Show/hide
Query:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
        MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD
Subjt:  MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASD

Query:  CPINVLSCPINDCPKT
        CPINVLSCPINDCPKT
Subjt:  CPINVLSCPINDCPKT

A0A6J1HCF0 uncharacterized protein LOC1114615571.4e-2568.04Show/hide
Query:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        MD SSK FQDI PQI  ++YP  HVLTV ++DFT NDLKVQVT T KLRI+GERR+  GK +RF KEI IPAD D  KISAKLE GIL V QP K S
Subjt:  MDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

SwissProt top hitse value%identityAlignment
A5JV83 Heat shock protein beta-112.9e-0434.15Show/hide
Query:  HVLTVAVQDFTSNDLKVQVTCTLKLRISG--ERRVNCGK------CIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS
        + LT+  QDF+  +L V+     KLR+SG  E++ + GK      C  FR+E D+P DV+   +S  L  G L ++ P + +
Subjt:  HVLTVAVQDFTSNDLKVQVTCTLKLRISG--ERRVNCGK------CIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKAS

Arabidopsis top hitse value%identityAlignment
AT2G27140.1 HSP20-like chaperones superfamily protein4.9e-1538.89Show/hide
Query:  SSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVR----QPMKASDC
        +++ + +  P    K   GF  LT+ +  F    LKVQVT T KLR+ G+R     K IRFRKE  IP ++D+  +SAK EG  L VR    +PM     
Subjt:  SSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVR----QPMKASDC

Query:  PINVLSCP
        PI   + P
Subjt:  PINVLSCP

AT5G20970.1 HSP20-like chaperones superfamily protein3.3e-1135.79Show/hide
Query:  KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCP
        + +Q+  P  +    P   VL   +  F    LKV VT T KLR++GER     K IRF +EI +P  VDI  +SA  +   L +R P   ++ P
Subjt:  KTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGATTTCACAAG
CAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCGATATTCCAG
CCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCATGTCCTATA
AATGATTGTCCAAAGACGTGA
mRNA sequenceShow/hide mRNA sequence
TTTCGAATCAAGATCTCCATTCAATATAAAGATTACCGCGAAAACATCGAAAGAAATCGTCATCAAGAGAAGTTAGAGCGAAGAGAAATTAGAATTATCAGAGAGGAAAA
TCGAACGCAATGTCGATGGATCCTTCATCCAAAACCTTTCAGGATATTACGCCTCAAATCAAGTGCAAATATTATCCCGGGTTTCATGTTCTTACCGTCGCCGTCCAAGA
TTTCACAAGCAACGATCTGAAAGTTCAGGTGACATGCACCTTAAAGTTGAGGATCAGCGGCGAACGAAGGGTCAACTGCGGCAAGTGTATCCGATTCCGCAAGGAAATCG
ATATTCCAGCCGACGTCGATATTTACAAGATCTCTGCCAAGTTGGAGGGAGGCATACTCTCAGTGAGGCAGCCCATGAAAGCCTCCGATTGTCCTATAAATGTCTTATCA
TGTCCTATAAATGATTGTCCAAAGACGTGATTTCTATAGACCTCTTCAACTATTACATCTCAGTGAGGCAGCCCAAGAAAGCCTCCGATTGTCCTATAAATGTCATTTGA
TTGTCTTATAAAAATATTTTAAATGATTGTCCTATAAATGATTGTCCAAA
Protein sequenceShow/hide protein sequence
MSMDPSSKTFQDITPQIKCKYYPGFHVLTVAVQDFTSNDLKVQVTCTLKLRISGERRVNCGKCIRFRKEIDIPADVDIYKISAKLEGGILSVRQPMKASDCPINVLSCPI
NDCPKT