; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G010730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G010730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr10:5776016..5777115
RNA-Seq ExpressionCmoCh10G010730
SyntenyCmoCh10G010730
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020266086.1 uncharacterized protein LOC109841535 [Asparagus officinalis]2.0e-2760.95Show/hide
Query:  IMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKK
        I++ K+  +EG VSL YP L+++NYSAWA+KMKVY+RAQGVWDAIE T+  D ++ RKDQMAL AIYQAI EE L  LAEKET K+AW+ LKT+H+G ++
Subjt:  IMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKK

Query:  EKQLR
         K+ +
Subjt:  EKQLR

XP_022925331.1 uncharacterized protein LOC111432621 [Cucurbita moschata]1.7e-4287.04Show/hide
Query:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG
        M KIMSSKS TKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDER DQMAL AIYQAIPEEMLF LAEKETAK+AWQ LKTIHVG
Subjt:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG

Query:  QKKEKQLR
         ++ K+ +
Subjt:  QKKEKQLR

XP_023535309.1 uncharacterized protein LOC111796783 [Cucurbita pepo subsp. pepo]7.2e-4187.38Show/hide
Query:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK
        SSK ATKEGLV+LQYPTLS+TNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMAL AIYQAIPEEMLF LAEKETAK+AWQTLKTIHVG ++ K
Subjt:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK

Query:  QLR
        + +
Subjt:  QLR

XP_023548354.1 uncharacterized protein LOC111807021 [Cucurbita pepo subsp. pepo]9.1e-2894.52Show/hide
Query:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEML
        S KSATKEGLV+LQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMAL AIYQAI EEML
Subjt:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEML

XP_023550513.1 uncharacterized protein LOC111808631 [Cucurbita pepo subsp. pepo]4.6e-4086.41Show/hide
Query:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK
        SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRA+G+WDAIESTESLDSLDERKDQMAL AIYQAIPEEMLF LAE ETAK+AWQ LKTIHVG ++ K
Subjt:  SSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK

Query:  QLR
        + +
Subjt:  QLR

TrEMBL top hitse value%identityAlignment
A0A0A9DE89 CCHC-type domain-containing protein5.0e-2459.22Show/hide
Query:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG
        MSK   + S  KE  V+LQYP L+R+NY++WA+ MK YL+AQGVW+AI+  + +D    RKDQMAL AIYQ IPEE+L  L EKETAK+AWQ LKT+H+G
Subjt:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG

Query:  QKK
         K+
Subjt:  QKK

A0A5N6PXR1 CCHC-type domain-containing protein9.5e-2354.26Show/hide
Query:  KEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK
        ++G +SLQYP L++ NY+AWA+KMKV+++AQGVWD IE T+   ++++R D+MA+ AIYQ IPEE L SLAEK +A++AW+TL+T+++G  + K
Subjt:  KEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEK

A0A6J1EBX7 uncharacterized protein LOC1114326218.2e-4387.04Show/hide
Query:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG
        M KIMSSKS TKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDER DQMAL AIYQAIPEEMLF LAEKETAK+AWQ LKTIHVG
Subjt:  MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVG

Query:  QKKEKQLR
         ++ K+ +
Subjt:  QKKEKQLR

A0A6J1F2T3 uncharacterized protein LOC1114392747.0e-2682.89Show/hide
Query:  MKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEKQLR
        MKMKVYLRAQGVWD I+STESLDSL+ERKDQMAL AIYQAIPEEMLF LAEKETAK+AWQTLKTIHVG ++ K+ +
Subjt:  MKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEKQLR

A0A6L2NLF6 Integrase catalytic domain-containing protein6.8e-2151.96Show/hide
Query:  SKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEKQ
        S+   KEG V+L+Y  L++TNYS WA+KM+V L+AQGVWDA +     + +++R+D+MAL AIYQAIPE++L  LA+K+TAK+AW+TL T+H+G ++ K+
Subjt:  SKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEKQ

Query:  LR
         +
Subjt:  LR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein3.0e-0531.03Show/hide
Query:  VSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIE----STESLDSLDE----------RKDQMALVAIYQAIPEEMLFSLAEKETAK
        V  Q P L+++NY  W+++MK  L A  VW+ +E      E+  SL +          ++D+ AL  IYQ + E+    + E  +AK
Subjt:  VSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIE----STESLDSLDE----------RKDQMALVAIYQAIPEEMLFSLAEKETAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGATCATGTCGTCGAAGTCTGCAACAAAGGAAGGTCTGGTATCACTCCAATACCCGACGTTATCGAGAACCAACTACTCAGCATGGGCTATGAAGATGAAGGT
CTATTTGCGTGCTCAAGGGGTGTGGGACGCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGTAGCTATCTATCAAGCAATCC
CTGAGGAGATGTTATTTTCTTTAGCAGAGAAAGAGACAGCAAAACAAGCATGGCAGACGTTAAAAACTATTCATGTCGGCCAGAAGAAGGAGAAACAATTGAGAGGTGAT
CGGGAGGAAGACTACATAACGTCGAGCAGCGGATCGAGAGGTGATCGGGGGAAGAAGAAGACTACAAGGAGGGGTCGTCTACTCCGTGAAGCGAGGTCATTGTTGGTGGA
CGGTCGGGATGCCTGGGACGCGGGCCTTGTTGTGCTACGTTCAGCGTCCAGAAGCAAGGAGAGTGGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAGATCATGTCGTCGAAGTCTGCAACAAAGGAAGGTCTGGTATCACTCCAATACCCGACGTTATCGAGAACCAACTACTCAGCATGGGCTATGAAGATGAAGGT
CTATTTGCGTGCTCAAGGGGTGTGGGACGCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGTAGCTATCTATCAAGCAATCC
CTGAGGAGATGTTATTTTCTTTAGCAGAGAAAGAGACAGCAAAACAAGCATGGCAGACGTTAAAAACTATTCATGTCGGCCAGAAGAAGGAGAAACAATTGAGAGGTGAT
CGGGAGGAAGACTACATAACGTCGAGCAGCGGATCGAGAGGTGATCGGGGGAAGAAGAAGACTACAAGGAGGGGTCGTCTACTCCGTGAAGCGAGGTCATTGTTGGTGGA
CGGTCGGGATGCCTGGGACGCGGGCCTTGTTGTGCTACGTTCAGCGTCCAGAAGCAAGGAGAGTGGACTTTGA
Protein sequenceShow/hide protein sequence
MSKIMSSKSATKEGLVSLQYPTLSRTNYSAWAMKMKVYLRAQGVWDAIESTESLDSLDERKDQMALVAIYQAIPEEMLFSLAEKETAKQAWQTLKTIHVGQKKEKQLRGD
REEDYITSSSGSRGDRGKKKTTRRGRLLREARSLLVDGRDAWDAGLVVLRSASRSKESGL