; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G010740 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G010740
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr10:5782689..5783758
RNA-Seq ExpressionCmoCh10G010740
SyntenyCmoCh10G010740
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022930203.1 uncharacterized protein LOC111436721 [Cucurbita moschata]1.5e-6268Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG
        +TMEEVIGRLKAYEERIGGNK+NAE VLLTQGEWK             EKKRSDNG H+RGRGRS RWRGRGHGRGNDS +QEKK DKSKV+CYNCQGLG
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG

Query:  HYASECRKVKCYNCQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS
        HY SEC KVKCYNCQKIGHY+S  RSKK E                               ELTEM LYEEKVV +EIEKK+NTWFLDTGASNHMTGCRS
Subjt:  HYASECRKVKCYNCQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS

XP_022946903.1 uncharacterized protein LOC111450844 [Cucurbita moschata]1.2e-5663.64Show/hide
Query:  MEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHY
        MEE+I RLKAYEERI GNKENAEHVLLTQGEWK             EKKRSDNGGH+RGRG S RWRGRGHGRG DS HQEKK DKSK+        GHY
Subjt:  MEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHY

Query:  ASECRKVKCYNCQKIGHYSSD-------------CRSKKWEELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTVKFGDGSH
        AS CR  K  +   +     D              R+    EL EMALYEEKVV KEIEKK+NTWFLDTGA+NHMT CRSWF ELNESV  TVKFGDGS 
Subjt:  ASECRKVKCYNCQKIGHYSSD-------------CRSKKWEELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTVKFGDGSH

Query:  VEIKERRDV
        VEIK R DV
Subjt:  VEIKERRDV

XP_023520946.1 uncharacterized protein LOC111784490 [Cucurbita pepo subsp. pepo]4.3e-10770.3Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN
        MTMEEVIG     EERIGGNKENAEHVLLTQGEWKEKKRSDNGGH+RGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRK+KCYN
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN

Query:  CQKIGHYSSDCRSKKWE--------------------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS
        CQKIGHY+SDCRSKK E                                            ELTEMALYEEKVVSKEIEKK+N WFLDT ASNHMTG RS
Subjt:  CQKIGHYSSDCRSKKWE--------------------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS

Query:  WFSELNESVVGTVKFGDGSHVEIKERRDVKAASVKKVEKMIDEEKIVGSVKIESEKKIEKQEEKKSDGEKIIGVVKFESEEKRDGVVAEVAGETKAEKEK
        WFSELNE V GTVKFGDGS VEIKER DVKAASVKK EKMI+EEKI G VKIES+KK   +E ++            E   + +    EVAGETKAEKEK
Subjt:  WFSELNESVVGTVKFGDGSHVEIKERRDVKAASVKKVEKMIDEEKIVGSVKIESEKKIEKQEEKKSDGEKIIGVVKFESEEKRDGVVAEVAGETKAEKEK

Query:  EKEAIVSGNAIEVTQGTKPILEQQLAGLVE
        EKEAIVSG+AIEV QGTKPI+EQQLAGLVE
Subjt:  EKEAIVSGNAIEVTQGTKPILEQQLAGLVE

XP_023535309.1 uncharacterized protein LOC111796783 [Cucurbita pepo subsp. pepo]1.6e-9365.12Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN
        MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEK+RSDNGGH+RGRGRSGRWRGRGHGRGNDSFH EKK DKSKVRCYNCQGLGHYASECRKV+CYN
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN

Query:  CQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTV
        CQKIGHY+SDCRSKKWE                               ELTEMALYEEKVV +EIEKKS            + G +  +  L++ V+G  
Subjt:  CQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTV

Query:  KFGDGSHVEIKERRDVKAASVKKVEKMIDEEKIVGSVKIESEKKIEKQEEKKSDGEKIIGVVKFESEEKRDGVVA-------EVAGETKAEKEKEKEAIV
        +  D                  + EKMIDEEKI GSVKIESEKK EK+EEKKSDGEKI+G VKFESEEK DGV+A       EVAGETKAEKEKEKEAIV
Subjt:  KFGDGSHVEIKERRDVKAASVKKVEKMIDEEKIVGSVKIESEKKIEKQEEKKSDGEKIIGVVKFESEEKRDGVVA-------EVAGETKAEKEKEKEAIV

Query:  SGNAIEVTQGTKPILEQQLAGLVE
        S +AIEV Q  KP+ E+ LAG VE
Subjt:  SGNAIEVTQGTKPILEQQLAGLVE

XP_023550513.1 uncharacterized protein LOC111808631 [Cucurbita pepo subsp. pepo]1.4e-5288.98Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN
        MTMEEVI RLKAY+ERIGGNKENAEHV LTQGEWKEK   DNGGH+RGRG SGRWRGRGHG GNDSF+QEKKADKSKVRCYNCQGLGHYASECRKVKCYN
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYN

Query:  CQKIGHYSSDCRSKKWEE
        CQKIGHY+SDCRSKK E+
Subjt:  CQKIGHYSSDCRSKKWEE

TrEMBL top hitse value%identityAlignment
A0A6J1EBX7 uncharacterized protein LOC1114326212.5e-3192.31Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKV
        MTMEEVIGRLKAYEERIGGNKEN EHVLLTQGEWK K+RSDNGGH+RGRG SGRWRGRGHGRGNDSFHQEKKADKSK+
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKV

A0A6J1EUE1 uncharacterized protein LOC1114367217.1e-6368Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG
        +TMEEVIGRLKAYEERIGGNK+NAE VLLTQGEWK             EKKRSDNG H+RGRGRS RWRGRGHGRGNDS +QEKK DKSKV+CYNCQGLG
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG

Query:  HYASECRKVKCYNCQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS
        HY SEC KVKCYNCQKIGHY+S  RSKK E                               ELTEM LYEEKVV +EIEKK+NTWFLDTGASNHMTGCRS
Subjt:  HYASECRKVKCYNCQKIGHYSSDCRSKKWE-------------------------------ELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRS

A0A6J1EY27 uncharacterized protein LOC1114392754.0e-5075.34Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG
        MTMEEVIGRLKAYEERIGGNKENAEHVL T+GEWK             EKKRS+NGGH+RGRGRSGRWRGRGHGRGNDS H+EKK DKSKV+ YNCQGLG
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG

Query:  HYASECRKVKCYNCQKIGHYSSDCRSKKWEE---LTEMALYEEKVV
        HYASECRKVKCYNCQKIGHY   CRSKK E+   LTEM   E++ V
Subjt:  HYASECRKVKCYNCQKIGHYSSDCRSKKWEE---LTEMALYEEKVV

A0A6J1F2T3 uncharacterized protein LOC1114392742.8e-5176.71Show/hide
Query:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG
        MTMEEVIGRLKAYEERIGGNKENAEHVL T+GEWK             EKKRS+NGGH+RGRGRSGRWRGRGHGRGNDS HQEKK DKSKV+ YNCQGLG
Subjt:  MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLG

Query:  HYASECRKVKCYNCQKIGHYSSDCRSKKWEE---LTEMALYEEKVV
        HYASECRKVKCYNCQKIGHY S CRSKK E+   LTEM   E++ V
Subjt:  HYASECRKVKCYNCQKIGHYSSDCRSKKWEE---LTEMALYEEKVV

A0A6J1G536 uncharacterized protein LOC1114508445.8e-5763.64Show/hide
Query:  MEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHY
        MEE+I RLKAYEERI GNKENAEHVLLTQGEWK             EKKRSDNGGH+RGRG S RWRGRGHGRG DS HQEKK DKSK+        GHY
Subjt:  MEEVIGRLKAYEERIGGNKENAEHVLLTQGEWK-------------EKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHY

Query:  ASECRKVKCYNCQKIGHYSSD-------------CRSKKWEELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTVKFGDGSH
        AS CR  K  +   +     D              R+    EL EMALYEEKVV KEIEKK+NTWFLDTGA+NHMT CRSWF ELNESV  TVKFGDGS 
Subjt:  ASECRKVKCYNCQKIGHYSSD-------------CRSKKWEELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTVKFGDGSH

Query:  VEIKERRDV
        VEIK R DV
Subjt:  VEIKERRDV

SwissProt top hitse value%identityAlignment
Q02836 Gag-Pol polyprotein5.0e-0540.43Show/hide
Query:  EKKADKSKVRCYNCQGLGHYASEC---RKVKCYNCQKIGHYSSDCRS
        +KK  +  ++C+NC   GH   EC   R++KC+ C KIGH + DC++
Subjt:  EKKADKSKVRCYNCQGLGHYASEC---RKVKCYNCQKIGHYSSDCRS

Q02843 Gag polyprotein5.0e-0540.43Show/hide
Query:  EKKADKSKVRCYNCQGLGHYASEC---RKVKCYNCQKIGHYSSDCRS
        +KK  +  ++C+NC   GH   EC   R++KC+ C KIGH + DC++
Subjt:  EKKADKSKVRCYNCQGLGHYASEC---RKVKCYNCQKIGHYSSDCRS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATGGAGGAAGTCATCGGCCGTCTTAAAGCATACGAGGAACGGATCGGTGGCAACAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGAGAA
AAAACGTAGCGATAATGGAGGCCATAACCGAGGGCGAGGTCGTAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTGGAAATGACTCGTTTCATCAAGAGAAGAAGGCTG
ATAAGAGCAAGGTAAGATGCTACAATTGTCAAGGCCTAGGCCACTATGCCTCAGAATGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATTCATCCGAC
TGTAGATCAAAGAAATGGGAGGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCTCGAAAGAAATTGAGAAGAAAAGCAACACTTGGTTCCTAGATACGGGAGC
CAGCAATCATATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAACGAGTCAGTGGTCGGCACGGTGAAGTTCGGAGATGGATCACATGTAGAGATAAAAGAACGTAGAG
ATGTGAAGGCTGCATCTGTGAAAAAAGTAGAGAAGATGATTGATGAGGAGAAAATCGTTGGCTCTGTGAAGATTGAATCGGAGAAAAAAATAGAGAAGCAAGAAGAGAAG
AAGAGCGATGGCGAGAAAATCATTGGCGTTGTGAAGTTTGAATCTGAGGAGAAGAGAGATGGCGTTGTGGCGGAGGTCGCCGGAGAAACGAAAGCAGAGAAGGAGAAGGA
GAAGGAGGCCATTGTTTCCGGCAATGCAATTGAAGTTACACAGGGAACTAAACCTATCCTGGAACAGCAGTTAGCCGGACTAGTAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCATGGAGGAAGTCATCGGCCGTCTTAAAGCATACGAGGAACGGATCGGTGGCAACAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGAGAA
AAAACGTAGCGATAATGGAGGCCATAACCGAGGGCGAGGTCGTAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTGGAAATGACTCGTTTCATCAAGAGAAGAAGGCTG
ATAAGAGCAAGGTAAGATGCTACAATTGTCAAGGCCTAGGCCACTATGCCTCAGAATGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATTCATCCGAC
TGTAGATCAAAGAAATGGGAGGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCTCGAAAGAAATTGAGAAGAAAAGCAACACTTGGTTCCTAGATACGGGAGC
CAGCAATCATATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAACGAGTCAGTGGTCGGCACGGTGAAGTTCGGAGATGGATCACATGTAGAGATAAAAGAACGTAGAG
ATGTGAAGGCTGCATCTGTGAAAAAAGTAGAGAAGATGATTGATGAGGAGAAAATCGTTGGCTCTGTGAAGATTGAATCGGAGAAAAAAATAGAGAAGCAAGAAGAGAAG
AAGAGCGATGGCGAGAAAATCATTGGCGTTGTGAAGTTTGAATCTGAGGAGAAGAGAGATGGCGTTGTGGCGGAGGTCGCCGGAGAAACGAAAGCAGAGAAGGAGAAGGA
GAAGGAGGCCATTGTTTCCGGCAATGCAATTGAAGTTACACAGGGAACTAAACCTATCCTGGAACAGCAGTTAGCCGGACTAGTAGAATAG
Protein sequenceShow/hide protein sequence
MTMEEVIGRLKAYEERIGGNKENAEHVLLTQGEWKEKKRSDNGGHNRGRGRSGRWRGRGHGRGNDSFHQEKKADKSKVRCYNCQGLGHYASECRKVKCYNCQKIGHYSSD
CRSKKWEELTEMALYEEKVVSKEIEKKSNTWFLDTGASNHMTGCRSWFSELNESVVGTVKFGDGSHVEIKERRDVKAASVKKVEKMIDEEKIVGSVKIESEKKIEKQEEK
KSDGEKIIGVVKFESEEKRDGVVAEVAGETKAEKEKEKEAIVSGNAIEVTQGTKPILEQQLAGLVE