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CmoCh10G010970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G010970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr10:6153647..6155567
RNA-Seq ExpressionCmoCh10G010970
SyntenyCmoCh10G010970
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8702390.1 hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]2.8e-5780.89Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG NRVKQVRLQTLRGELES+K+KE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   ++ELTGSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

KAE8721174.1 hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]4.8e-5780.89Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG +RVKQVRLQTLRGELES+KMKE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   ++ELTGSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

KAE8732752.1 hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus]4.8e-5781.53Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG +RVKQVRLQTLRGELES+KMKE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKK-KEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   I+ELTGSLE HEQRKKK KEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKK-KEEILDQAL

XP_023521026.1 putative WEB family protein At1g65010, chloroplastic [Cucurbita pepo subsp. pepo]4.5e-6383.44Show/hide
Query:  NKVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPET
        NK LKELRSKDKA+LYML  AVD+ GFEKIARATTSK  WDTLEKV KGT++VK VRLQTLRGELESMKMKESENVFDYIT +QTVANQLN NGEMLPET
Subjt:  NKVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPET

Query:  RVVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKKKEEILDQAL
        RVVEKILRSLTDNFENV+C IEESK+LA F +DEL GSL+ HEQRKKKK+E LDQAL
Subjt:  RVVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKKKEEILDQAL

XP_040962217.1 uncharacterized protein LOC121223796 [Gossypium hirsutum]5.7e-5880.38Show/hide
Query:  NKVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPET
        NK LKE+RSKDKAALYMLFRAVD+SGFEKIA ATTSK AWD L KV KG +RVKQVRLQTLRGELE MKMKESE V DYIT VQTV NQLN NGE L + 
Subjt:  NKVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPET

Query:  RVVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        RVVEKILRSLTD+FEN VCAIEESKDLA   +DEL GSLE HEQR KKKKEE L+QAL
Subjt:  RVVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

TrEMBL top hitse value%identityAlignment
A0A059QBK0 Polyprotein6.3e-5576.43Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE+RSKDKAALYML+RAVD++ FEKIA A+TSK AWD LEKV KG +RVKQVRLQTLRGELE+MKM ESE+V DYIT VQ V NQLN NGE L + R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        VVEKILR+LTDNFE++VCAIEESKDLA   +DEL GSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

A0A6A3AD07 Uncharacterized protein1.4e-5780.89Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG NRVKQVRLQTLRGELES+K+KE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   ++ELTGSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

A0A6A3ASE2 Uncharacterized protein3.3e-5679.62Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG +RVKQVRLQTLR ELES+KMKE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        V+EKILRSLTDNFENVVCAIEESKDLA   ++ELTGSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

A0A6A3BX58 Uncharacterized protein2.3e-5780.89Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG +RVKQVRLQTLRGELES+KMKE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   ++ELTGSLE HEQR KKKKEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQR-KKKKEEILDQAL

A0A6A3CZT6 Uncharacterized protein2.3e-5781.53Show/hide
Query:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR
        K LKE RSKDKAALYMLFRAVD+SGFEKIA A TSK AWD L KV KG +RVKQVRLQTLRGELES+KMKE E+V DYIT VQTV NQLN NGE L E R
Subjt:  KVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKESENVFDYITCVQTVANQLNPNGEMLPETR

Query:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKK-KEEILDQAL
        VVEKILRSLTDNFENVVCAIEESKDLA   I+ELTGSLE HEQRKKK KEE L+QAL
Subjt:  VVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKK-KEEILDQAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTTTGTTTAGGACTTGATGATGATGATAATGGTGAAGTGTATTTTATTAGTTTGTTCACTATACTCCTCGCTCTTGGAGTTGCTTTATTAATGATGAAGAATGG
ATGGAACAAGGTGCTAAAAGAATTGCGATCAAAGGATAAGGCAGCATTATACATGTTGTTCCGGGCTGTTGACGACTCGGGCTTTGAGAAGATTGCAAGAGCAACTACTT
CAAAAGGAGCGTGGGACACTTTAGAAAAAGTGTTAAAAGGAACCAACCGAGTCAAGCAGGTGCGTCTCCAAACTCTTCGTGGCGAGTTGGAGAGCATGAAGATGAAGGAG
TCAGAAAATGTATTTGACTACATTACGTGTGTACAGACCGTAGCAAATCAACTAAATCCAAACGGAGAAATGTTACCCGAGACGCGGGTTGTGGAAAAGATCTTGAGGTC
GTTAACTGACAACTTCGAGAATGTTGTATGTGCGATAGAAGAGTCAAAGGACCTAGCGGCGTTCGCGATCGATGAGCTCACCGGTTCTCTCGAGGAACATGAACAACGTA
AGAAAAAGAAGGAAGAGATACTCGATCAAGCGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTTTGTTTAGGACTTGATGATGATGATAATGGTGAAGTGTATTTTATTAGTTTGTTCACTATACTCCTCGCTCTTGGAGTTGCTTTATTAATGATGAAGAATGG
ATGGAACAAGGTGCTAAAAGAATTGCGATCAAAGGATAAGGCAGCATTATACATGTTGTTCCGGGCTGTTGACGACTCGGGCTTTGAGAAGATTGCAAGAGCAACTACTT
CAAAAGGAGCGTGGGACACTTTAGAAAAAGTGTTAAAAGGAACCAACCGAGTCAAGCAGGTGCGTCTCCAAACTCTTCGTGGCGAGTTGGAGAGCATGAAGATGAAGGAG
TCAGAAAATGTATTTGACTACATTACGTGTGTACAGACCGTAGCAAATCAACTAAATCCAAACGGAGAAATGTTACCCGAGACGCGGGTTGTGGAAAAGATCTTGAGGTC
GTTAACTGACAACTTCGAGAATGTTGTATGTGCGATAGAAGAGTCAAAGGACCTAGCGGCGTTCGCGATCGATGAGCTCACCGGTTCTCTCGAGGAACATGAACAACGTA
AGAAAAAGAAGGAAGAGATACTCGATCAAGCGCTTTAG
Protein sequenceShow/hide protein sequence
MAFCLGLDDDDNGEVYFISLFTILLALGVALLMMKNGWNKVLKELRSKDKAALYMLFRAVDDSGFEKIARATTSKGAWDTLEKVLKGTNRVKQVRLQTLRGELESMKMKE
SENVFDYITCVQTVANQLNPNGEMLPETRVVEKILRSLTDNFENVVCAIEESKDLAAFAIDELTGSLEEHEQRKKKKEEILDQAL