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CmoCh10G011210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G011210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranslation initiation factor 1
Genome locationCmo_Chr10:8442268..8442600
RNA-Seq ExpressionCmoCh10G011210
SyntenyCmoCh10G011210
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJR52992.1 translation initiation factor 1 [Herpetospermum pedunculosum]3.2e-1591.67Show/hide
Query:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        IY+ LITESLPNGMFGVCLDNEDPIL YVS RIRHSFIHILGHIESKL
Subjt:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

QSQ72345.1 translational initiation factor 1 [Benincasa hispida]1.3e-1393.02Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESK
        LITESL NGMF VCLDNEDPILGYVSGRIRHSFIHILGH ESK
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESK

QWV60874.1 translation initiation factor 1 [Cucurbita ficifolia]2.1e-1497.56Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIE
        LITESLPNGMFGVCLDNEDP LGYVSGRIRHSFIHILGHIE
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIE

YP_009447485.1 translation initiation factor 1 [Cucurbita maxima]2.0e-17100Show/hide
Query:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Subjt:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

YP_009560870.1 InfA [Trichosanthes kirilowii]1.1e-1591.67Show/hide
Query:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        IY+ LITESLPNGMFGVCLDNEDPILGYVS RIRHSFIH+LGHIESKL
Subjt:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

TrEMBL top hitse value%identityAlignment
A0A1P8LEB1 Translation initiation factor 12.5e-1392.86Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIES
        LITESL NGMF VCLDNEDPILGYVSGRIRHSFIHILGH ES
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIES

A0A2H4T1Y1 Translation initiation factor 19.7e-18100Show/hide
Query:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Subjt:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

A0A2H4T267 Translation initiation factor 19.7e-18100Show/hide
Query:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Subjt:  DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

A0A410HFB7 InfA5.3e-1691.67Show/hide
Query:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        IY+ LITESLPNGMFGVCLDNEDPILGYVS RIRHSFIH+LGHIESKL
Subjt:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

A0A6M4K3R3 Translation initiation factor 11.6e-1591.67Show/hide
Query:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
        IY+ LITESLPNGMFGVCLDNEDPIL YVS RIRHSFIHILGHIESKL
Subjt:  IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

SwissProt top hitse value%identityAlignment
A5J1W9 Translation initiation factor IF-1, chloroplastic3.5e-1289.19Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        LITESL N MF VCL+NEDPILGYVSGRIRHSFIHIL
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL

A6MMF7 Translation initiation factor IF-1, chloroplastic5.5e-1086.49Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL

P08698 Translation initiation factor IF-1, chloroplastic3.2e-1086.49Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        LITESLPNGMF V LDNEDPILGYVSGRIR S I IL
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL

Q06GW2 Translation initiation factor IF-1, chloroplastic5.5e-1086.49Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL

Q7YJU4 Translation initiation factor IF-1, chloroplastic5.5e-1086.49Show/hide
Query:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Subjt:  LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein3.7e-0956.6Show/hide
Query:  KLDYRESAEKFCVIYDLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL
        K   +E + K  VI  L+TESLPNGMF V L+N D ILGY+ G+IR +FI IL
Subjt:  KLDYRESAEKFCVIYDLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCGAGAAGCTCGACTACAGGGAATCGGCGGAGAAATTTTGTGTTATATATGATTTAATTACTGAATCACTTCCCAATGGTATGTTTGGGGTTTGTTTAGATAATGAGGA
TCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATACATATACTAGGTCATATAGAGTCAAAATTG
mRNA sequenceShow/hide mRNA sequence
ACCGAGAAGCTCGACTACAGGGAATCGGCGGAGAAATTTTGTGTTATATATGATTTAATTACTGAATCACTTCCCAATGGTATGTTTGGGGTTTGTTTAGATAATGAGGA
TCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATACATATACTAGGTCATATAGAGTCAAAATTG
Protein sequenceShow/hide protein sequence
TEKLDYRESAEKFCVIYDLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL