CuGenDBv2

Gene ID	CmoCh10G011460
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	39S ribosomal protein L45, mitochondrial isoform X1
Genome location	Cmo_Chr10:9664866..9675221
RNA-Seq Expression	CmoCh10G011460
Synteny	CmoCh10G011460
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR007379 - Tim44-like domain IPR032710 - NTF2-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6590370.1 hypothetical protein SDJN03_15793, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-102

97.99

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTE + S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

KAG7023934.1 hypothetical protein SDJN02_14962 [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-102

97.99

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTE + S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

XP_022961563.1 39S ribosomal protein L45, mitochondrial isoform X1 [Cucurbita moschata]

4.5e-103

98.49

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

XP_022961564.1 uncharacterized protein LOC111462108 isoform X2 [Cucurbita moschata]

4.5e-103

98.49

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

XP_022961565.1 uncharacterized protein LOC111462108 isoform X3 [Cucurbita moschata]

4.5e-103

98.49

Show/hide

Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HC62 39S ribosomal protein L45, mitochondrial isoform X1

2.2e-103

98.49

Show/hide

Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

A0A6J1HCK5 uncharacterized protein LOC111462108 isoform X3

2.2e-103

98.49

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

A0A6J1HEF0 uncharacterized protein LOC111462108 isoform X2

2.2e-103

98.49

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEK+ S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

A0A6J1HZ27 uncharacterized protein LOC111467908 isoform X2

1.1e-99

94.97

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Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQ LYRTAQNRAFTSRVGSSANYSCGITNGG V+QLGIQKTSFLSN+HTAFSL RGHKMIICSAVAADLSIFSH IGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTE + S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

A0A6J1I0M8 uncharacterized protein LOC111467908 isoform X3

1.1e-99

94.97

Show/hide

Query:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG
        MNSRLLQ LYRTAQNRAFTSRVGSSANYSCGITNGG V+QLGIQKTSFLSN+HTAFSL RGHKMIICSAVAADLSIFSH IGIRLATTQAKAPPQARQMG
Subjt:  MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMG

Query:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTE + S L
Subjt:  ALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G27395.1 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein

1.2e-37

53.25

Show/hide

Query:  SNSHTAFS-LVRGHKM---IICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMGALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILEL
        ++  +A+S L  GH +   ++ S + A+   F +    R ATTQ KAPPQ ++ GA++VSM+SPG +YEPY+ R+ I  W+R FTRSGWRRTK+D I EL
Subjt:  SNSHTAFS-LVRGHKM---IICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMGALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILEL

Query:  KSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        +SAYAIAKLRK GYSK  FY EA+ LYK+IN  +ANG+K ++RK VTE++ S L
Subjt:  KSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

AT5G27395.2 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein

1.2e-37

53.25

Show/hide

Query:  SNSHTAFS-LVRGHKM---IICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMGALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILEL
        ++  +A+S L  GH +   ++ S + A+   F +    R ATTQ KAPPQ ++ GA++VSM+SPG +YEPY+ R+ I  W+R FTRSGWRRTK+D I EL
Subjt:  SNSHTAFS-LVRGHKM---IICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMGALKVSMLSPGIIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILEL

Query:  KSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL
        +SAYAIAKLRK GYSK  FY EA+ LYK+IN  +ANG+K ++RK VTE++ S L
Subjt:  KSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATTCCAGATTACTCCAAATCCTGTATCGCACGGCACAGAATCGAGCATTTACTTCTCGGGTTGGAAGTTCAGCAAACTATTCATGTGGCATCACAAATGGTGGTTT
AGTTAATCAATTGGGTATTCAGAAGACTTCTTTCCTCAGTAACAGTCACACTGCTTTTTCACTGGTTCGGGGACATAAGATGATAATATGTTCTGCAGTGGCTGCAGATT
TATCAATATTCTCGCATAGCATTGGCATTAGGTTGGCGACAACACAAGCAAAAGCCCCCCCACAAGCACGTCAAATGGGAGCCCTCAAAGTTTCCATGTTGAGTCCTGGA
ATTATCTATGAACCTTATTCACCTCGTCAACCAATACCATTTTGGCAGAGATGGTTCACAAGAAGTGGTTGGAGGAGAACAAAAGACGATATCATTTTAGAGCTAAAAAG
TGCTTACGCAATTGCAAAATTAAGAAAGAAGGGGTACTCAAAGAAACAATTTTACGAAGAGGCAGTAAATTTATATAAAGAGATAAACACTTTGATAGCAAATGGTGACA
AAACATCGTTGAGGAAAGCAGTCACAGAGAAAATAAGGTCATGCCTGCATTGA

mRNA sequence

Show/hide mRNA sequence

CGCACTCATCACTCCGTTTCGTTTGTTTGATCCGTTAAACCCTTCGAACCAAAAACCTCTTCCTGTGACCGATCTTACTTTTCATGATCGGAGAAAATAGCGCCAGAGGT
TTTCAGATTTGGTACTAGAAATGAATTCCAGATTACTCCAAATCCTGTATCGCACGGCACAGAATCGAGCATTTACTTCTCGGGTTGGAAGTTCAGCAAACTATTCATGT
GGCATCACAAATGGTGGTTTAGTTAATCAATTGGGTATTCAGAAGACTTCTTTCCTCAGTAACAGTCACACTGCTTTTTCACTGGTTCGGGGACATAAGATGATAATATG
TTCTGCAGTGGCTGCAGATTTATCAATATTCTCGCATAGCATTGGCATTAGGTTGGCGACAACACAAGCAAAAGCCCCCCCACAAGCACGTCAAATGGGAGCCCTCAAAG
TTTCCATGTTGAGTCCTGGAATTATCTATGAACCTTATTCACCTCGTCAACCAATACCATTTTGGCAGAGATGGTTCACAAGAAGTGGTTGGAGGAGAACAAAAGACGAT
ATCATTTTAGAGCTAAAAAGTGCTTACGCAATTGCAAAATTAAGAAAGAAGGGGTACTCAAAGAAACAATTTTACGAAGAGGCAGTAAATTTATATAAAGAGATAAACAC
TTTGATAGCAAATGGTGACAAAACATCGTTGAGGAAAGCAGTCACAGAGAAAATAAGGTCATGCCTGCATTGA

Protein sequence

Show/hide protein sequence

MNSRLLQILYRTAQNRAFTSRVGSSANYSCGITNGGLVNQLGIQKTSFLSNSHTAFSLVRGHKMIICSAVAADLSIFSHSIGIRLATTQAKAPPQARQMGALKVSMLSPG
IIYEPYSPRQPIPFWQRWFTRSGWRRTKDDIILELKSAYAIAKLRKKGYSKKQFYEEAVNLYKEINTLIANGDKTSLRKAVTEKIRSCLH

CmoCh10G011460 (gene) of Cucurbita moschata (Rifu) v1 genome