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CmoCh10G011490 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G011490
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH96-like
Genome locationCmo_Chr10:9722665..9723281
RNA-Seq ExpressionCmoCh10G011490
SyntenyCmoCh10G011490
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590375.1 Transcription factor basic helix-loop-helix 96, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4999.04Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGV+QLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

KAG7023938.1 Transcription factor bHLH96 [Cucurbita argyrosperma subsp. argyrosperma]5.7e-4999.03Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGV+QLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFS
        AFS
Subjt:  AFS

XP_022961533.1 transcription factor bHLH96-like [Cucurbita moschata]5.2e-50100Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

XP_022968825.1 transcription factor bHLH96-like [Cucurbita maxima]3.1e-4795.19Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSN SNPNNVID+EVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVL LNVSTAH+IALYSFTLKVEEDC LCSEEEISRGVYQLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

XP_023520772.1 transcription factor bHLH96-like [Cucurbita pepo subsp. pepo]2.2e-4594.23Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDR   +NPNNVIDVEVSMA+C+ARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

TrEMBL top hitse value%identityAlignment
A0A0A0LW29 BHLH domain-containing protein1.1e-3271.3Show/hide
Query:  MASTDRSNLSNPNNVI-----DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLC
        +A T  +NL+N N+VI     D+EVSM + HA +KIRC+K PKQL KIVSGLHSL LTVLHLNVSTAH   LYSF+LKVEEDCGL S +EIS GVYQLLC
Subjt:  MASTDRSNLSNPNNVI-----DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLC

Query:  RIQEEAFS
        RIQEEAFS
Subjt:  RIQEEAFS

A0A1S3BQS8 transcription factor bHLH94-like1.5e-3166.67Show/hide
Query:  MASTDRSNLSNPNN--------VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQ
        +A T  +NL+N NN        + D+EVSM + HA +KIRC+K PKQL KIVSGLHSL L+VLHLNVSTAH+  LYSF+LKVEEDCGL S +EI+ GVYQ
Subjt:  MASTDRSNLSNPNN--------VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQ

Query:  LLCRIQEEAFS
        LLCRIQEEAFS
Subjt:  LLCRIQEEAFS

A0A6J1ERT7 transcription factor bHLH94-like4.9e-3075.56Show/hide
Query:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAFSV
        +  V VSMA+ HA +KIRC KFPKQL KIVS LHSLRL+VLHLN+STAH+  LYSF+LKVEEDCGL SE+EI+R VYQL+CRIQEEAFSV
Subjt:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAFSV

A0A6J1HC29 transcription factor bHLH96-like2.5e-50100Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

A0A6J1HYA2 transcription factor bHLH96-like1.5e-4795.19Show/hide
Query:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        MASTDRSN SNPNNVID+EVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVL LNVSTAH+IALYSFTLKVEEDC LCSEEEISRGVYQLLCRIQEE
Subjt:  MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Query:  AFSV
        AFSV
Subjt:  AFSV

SwissProt top hitse value%identityAlignment
Q56XR0 Transcription factor bHLH713.4e-1241.24Show/hide
Query:  DVEVSMAECHARIKIRCRK-----------FPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAF
        D+EV++ E HA I+I  R+            P QL K+V+ L SL L++LHL+V+T    A+YS + KVEE C L S ++I+  V+ +L  I+EE F
Subjt:  DVEVSMAECHARIKIRCRK-----------FPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAF

Q9C7T4 Transcription factor bHLH966.6e-1650.59Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEA
        ++EV+M E HA +KI  +K P+QL K+VS + SLRLT+LHLNV+T  +  LYS ++KVEE   L + E+I+  V Q+L RI+EE+
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEA

Q9FKQ6 Transcription factor bHLH994.4e-1241.38Show/hide
Query:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLC-SEEEISRGVYQLLCRIQEE
        V DVEV+M E HA IK+  +  P+ L KI++  +SL L+ LHLN++T+ +++L++F++KVE DC L  S  E++  V++++ R+ +E
Subjt:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLC-SEEEISRGVYQLLCRIQEE

Q9M128 Transcription factor bHLH572.9e-1134.52Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        +VE ++ + H  +K+RC++  +Q+ K +  +  L+L +LHL +S++ +  +YSF LK+E+ C L S +EI+  V+Q+  +I  E
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Q9SK91 Transcription factor bHLH942.5e-1548.81Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        ++EV++AE HA IKI  +K P+QL K+++ L SLRLT+LHLNV+T H   LYS +++VEE   L + ++I+  + Q + RIQEE
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

Arabidopsis top hitse value%identityAlignment
AT1G22490.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-1648.81Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        ++EV++AE HA IKI  +K P+QL K+++ L SLRLT+LHLNV+T H   LYS +++VEE   L + ++I+  + Q + RIQEE
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.7e-1750.59Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEA
        ++EV+M E HA +KI  +K P+QL K+VS + SLRLT+LHLNV+T  +  LYS ++KVEE   L + E+I+  V Q+L RI+EE+
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEA

AT4G01460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.0e-1234.52Show/hide
Query:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE
        +VE ++ + H  +K+RC++  +Q+ K +  +  L+L +LHL +S++ +  +YSF LK+E+ C L S +EI+  V+Q+  +I  E
Subjt:  DVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEE

AT5G46690.1 beta HLH protein 712.4e-1341.24Show/hide
Query:  DVEVSMAECHARIKIRCRK-----------FPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAF
        D+EV++ E HA I+I  R+            P QL K+V+ L SL L++LHL+V+T    A+YS + KVEE C L S ++I+  V+ +L  I+EE F
Subjt:  DVEVSMAECHARIKIRCRK-----------FPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAF

AT5G65320.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.1e-1341.38Show/hide
Query:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLC-SEEEISRGVYQLLCRIQEE
        V DVEV+M E HA IK+  +  P+ L KI++  +SL L+ LHLN++T+ +++L++F++KVE DC L  S  E++  V++++ R+ +E
Subjt:  VIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLC-SEEEISRGVYQLLCRIQEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCACCGATCGTAGCAACCTAAGCAACCCGAACAACGTAATCGACGTTGAAGTGTCGATGGCGGAGTGTCATGCAAGGATTAAGATAAGATGTAGAAAGTTCCC
GAAGCAGCTTCGTAAGATCGTGTCCGGCTTGCATTCCTTGCGCCTCACTGTTCTTCATCTCAATGTCTCCACGGCTCATGAGATTGCGCTCTACTCTTTCACTCTCAAGG
TTGAGGAAGATTGTGGGCTTTGCTCGGAGGAGGAAATTTCAAGAGGCGTGTATCAATTGCTTTGCAGAATTCAAGAAGAGGCATTCTCAGTTTGA
mRNA sequenceShow/hide mRNA sequence
TTCGATCACTTTCTCTTATTTCTTTACCTCCCCGTCCCCGTTTTCGTCCTCTCATTCTTGGCCATTCATGGCGTCCACCGATCGTAGCAACCTAAGCAACCCGAACAACG
TAATCGACGTTGAAGTGTCGATGGCGGAGTGTCATGCAAGGATTAAGATAAGATGTAGAAAGTTCCCGAAGCAGCTTCGTAAGATCGTGTCCGGCTTGCATTCCTTGCGC
CTCACTGTTCTTCATCTCAATGTCTCCACGGCTCATGAGATTGCGCTCTACTCTTTCACTCTCAAGGTTGAGGAAGATTGTGGGCTTTGCTCGGAGGAGGAAATTTCAAG
AGGCGTGTATCAATTGCTTTGCAGAATTCAAGAAGAGGCATTCTCAGTTTGATTTTTTTTTTAAATAGAATTTTAATTAATGATCTTGAATTTTCTTTTTCTTGATGGAG
TTGGAGCTTCACATTGTAAACTTTGAGATTGTATTTGTTTTGTTCTTCTTTGTC
Protein sequenceShow/hide protein sequence
MASTDRSNLSNPNNVIDVEVSMAECHARIKIRCRKFPKQLRKIVSGLHSLRLTVLHLNVSTAHEIALYSFTLKVEEDCGLCSEEEISRGVYQLLCRIQEEAFSV