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CmoCh10G011650 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G011650
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionnuclear transcription factor Y subunit B-4-like
Genome locationCmo_Chr10:10362746..10363135
RNA-Seq ExpressionCmoCh10G011650
SyntenyCmoCh10G011650
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050890.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]3.9e-3969.63Show/hide
Query:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYLLKYR+VERI   
Subjt:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-

Query:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS
        ++K  I      Q   D+E E  H    GEIGETS
Subjt:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS

KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]9.2e-6596.99Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHD----QELEFYHGEIGETS
        AQFKTNIAPEQQKHD    QELEFYHGEIGETS
Subjt:  AQFKTNIAPEQQKHD----QELEFYHGEIGETS

XP_022961414.1 nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]1.7e-66100Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHDQELEFYHGEIGETS
        AQFKTNIAPEQQKHDQELEFYHGEIGETS
Subjt:  AQFKTNIAPEQQKHDQELEFYHGEIGETS

XP_022968852.1 nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]1.6e-6187.41Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRD+ERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKH--------------DQELEFYHGEIGETS
        AQFKTNIA EQQ+H              +QELEFYHGEIGETS
Subjt:  AQFKTNIAPEQQKH--------------DQELEFYHGEIGETS

XP_023546470.1 nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]3.1e-6089.78Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHD----------QELEFYHGEIGE
        AQFKTNIAPEQQ+HD          QELEF HGE  E
Subjt:  AQFKTNIAPEQQKHD----------QELEFYHGEIGE

TrEMBL top hitse value%identityAlignment
A0A1S3BRX1 nuclear transcription factor Y subunit B-41.2e-3868.89Show/hide
Query:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYL KYR+VERI   
Subjt:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-

Query:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS
        ++K  I      Q   D+E E  H    GEIGETS
Subjt:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS

A0A5A7U6S7 Nuclear transcription factor Y subunit B-41.9e-3969.63Show/hide
Query:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYLLKYR+VERI   
Subjt:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-

Query:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS
        ++K  I      Q   D+E E  H    GEIGETS
Subjt:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS

A0A5D3CG76 Nuclear transcription factor Y subunit B-41.2e-3868.89Show/hide
Query:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYL KYR+VERI   
Subjt:  NNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-

Query:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS
        ++K  I      Q   D+E E  H    GEIGETS
Subjt:  QFKTNIAPE---QQKHDQELEFYH----GEIGETS

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like8.1e-67100Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHDQELEFYHGEIGETS
        AQFKTNIAPEQQKHDQELEFYHGEIGETS
Subjt:  AQFKTNIAPEQQKHDQELEFYHGEIGETS

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like7.9e-6287.41Show/hide
Query:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRD+ERIN
Subjt:  MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKH--------------DQELEFYHGEIGETS
        AQFKTNIA EQQ+H              +QELEFYHGEIGETS
Subjt:  AQFKTNIAPEQQKH--------------DQELEFYHGEIGETS

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-42.4e-3172.73Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVER
        LPIANVGRLMK+ILP  AKISKEAK T+QECATEFISFVT EA+EKCH++NR+T+NGDDI WA  + GLDNYA+A  ++L KYR+ ER
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVER

O23310 Nuclear transcription factor Y subunit B-31.6e-2458.62Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANV R+MKK LP  AKISK+AK T+QEC +EFISF+T EA++KC ++ R+T+NGDD+ WA  + G ++Y E    YL KYR+VE
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE

O82248 Nuclear transcription factor Y subunit B-51.9e-2866.67Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANVGR+MK ILP  AK+SKEAK TMQEC +EFISFVT EA++KCHK+ R+T+NGDDICWA  + G D+YA    KYL +YR +E
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE

Q9FGJ3 Nuclear transcription factor Y subunit B-21.6e-2458.62Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANV R+MKK LP  AKISK+AK TMQEC +EFISFVT EA++KC K+ R+T+NGDD+ WA  + G ++Y E    YL ++R++E
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE

Q9SIT9 Nuclear transcription factor Y subunit B-71.5e-2551.28Show/hide
Query:  NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        NN ++ Q   LPIANVGR+MKK+LP   KISK+AK T+QEC +EFISFVT EA++KC ++ R+T+NGDDI WA  + G ++Y      YL KYRD E   
Subjt:  NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHDQE
           K N   +QQ+  Q+
Subjt:  AQFKTNIAPEQQKHDQE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B41.7e-3272.73Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVER
        LPIANVGRLMK+ILP  AKISKEAK T+QECATEFISFVT EA+EKCH++NR+T+NGDDI WA  + GLDNYA+A  ++L KYR+ ER
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVER

AT2G13570.1 nuclear factor Y, subunit B71.1e-2651.28Show/hide
Query:  NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN
        NN ++ Q   LPIANVGR+MKK+LP   KISK+AK T+QEC +EFISFVT EA++KC ++ R+T+NGDDI WA  + G ++Y      YL KYRD E   
Subjt:  NNGDELQ---LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERIN

Query:  AQFKTNIAPEQQKHDQE
           K N   +QQ+  Q+
Subjt:  AQFKTNIAPEQQKHDQE

AT2G47810.1 nuclear factor Y, subunit B51.3e-2966.67Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANVGR+MK ILP  AK+SKEAK TMQEC +EFISFVT EA++KCHK+ R+T+NGDDICWA  + G D+YA    KYL +YR +E
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE

AT4G14540.1 nuclear factor Y, subunit B31.2e-2558.62Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANV R+MKK LP  AKISK+AK T+QEC +EFISF+T EA++KC ++ R+T+NGDD+ WA  + G ++Y E    YL KYR+VE
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE

AT5G47640.1 nuclear factor Y, subunit B21.2e-2558.62Show/hide
Query:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE
        LPIANV R+MKK LP  AKISK+AK TMQEC +EFISFVT EA++KC K+ R+T+NGDD+ WA  + G ++Y E    YL ++R++E
Subjt:  LPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAACAATGGAGATGAGCTTCAACTACCAATTGCCAACGTTGGGAGATTAATGAAGAAGATTCTTCCCCAAAAGGCCAAGATTTCCAAAGAAGCCAAAGCGAC
AATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTGAAAAATGTCACAAAGACAATCGAAGAACTCTCAATGGCGACGATATTTGTTGGGCTT
TTGGTTCTTTTGGCTTAGACAACTATGCTGAGGCTTCTGCCAAGTACTTGCTCAAATATAGGGACGTCGAGAGAATCAACGCTCAATTCAAAACCAATATCGCTCCAGAA
CAACAAAAACACGATCAAGAACTTGAGTTTTATCATGGTGAAATCGGTGAAACGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAACAATGGAGATGAGCTTCAACTACCAATTGCCAACGTTGGGAGATTAATGAAGAAGATTCTTCCCCAAAAGGCCAAGATTTCCAAAGAAGCCAAAGCGAC
AATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTAACAAGTGAAGCAGCTGAAAAATGTCACAAAGACAATCGAAGAACTCTCAATGGCGACGATATTTGTTGGGCTT
TTGGTTCTTTTGGCTTAGACAACTATGCTGAGGCTTCTGCCAAGTACTTGCTCAAATATAGGGACGTCGAGAGAATCAACGCTCAATTCAAAACCAATATCGCTCCAGAA
CAACAAAAACACGATCAAGAACTTGAGTTTTATCATGGTGAAATCGGTGAAACGTCTTAA
Protein sequenceShow/hide protein sequence
MGENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNRRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPE
QQKHDQELEFYHGEIGETS