; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G011780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G011780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontrafficking protein particle complex subunit 6B
Genome locationCmo_Chr10:10533242..10534154
RNA-Seq ExpressionCmoCh10G011780
SyntenyCmoCh10G011780
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0043087 - regulation of GTPase activity (biological process)
GO:0005801 - cis-Golgi network (cellular component)
GO:0005802 - trans-Golgi network (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007194 - Transport protein particle (TRAPP) component
IPR024096 - NO signalling/Golgi transport ligand-binding domain superfamily
IPR037992 - TRAPP complex, Trs33 subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023966.1 Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-62100Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIKV
        VSADISNLPACSFVVRIKV
Subjt:  VSADISNLPACSFVVRIKV

XP_008450727.1 PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo]3.1e-5998.31Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        VSADISNLPACSFVVRIK
Subjt:  VSADISNLPACSFVVRIK

XP_008450728.1 PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo]3.1e-5998.31Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        VSADISNLPACSFVVRIK
Subjt:  VSADISNLPACSFVVRIK

XP_022961590.1 trafficking protein particle complex subunit 6B [Cucurbita moschata]1.8e-62100Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIKV
        VSADISNLPACSFVVRIKV
Subjt:  VSADISNLPACSFVVRIKV

XP_023545328.1 trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo]5.1e-6299.16Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIKV
        VSADISNLPACSFVVRIKV
Subjt:  VSADISNLPACSFVVRIKV

TrEMBL top hitse value%identityAlignment
A0A1S3BP90 trafficking protein particle complex subunit 6B isoform X21.5e-5998.31Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        VSADISNLPACSFVVRIK
Subjt:  VSADISNLPACSFVVRIK

A0A5D3CG65 Trafficking protein particle complex subunit 6B isoform X21.5e-5998.31Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        VSADISNLPACSFVVRIK
Subjt:  VSADISNLPACSFVVRIK

A0A6J1DP88 trafficking protein particle complex subunit 6B1.5e-5996.61Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQD SADGE+KAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        VSADISNLPACSFVVRIK
Subjt:  VSADISNLPACSFVVRIK

A0A6J1HCN4 trafficking protein particle complex subunit 6B8.6e-63100Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIKV
        VSADISNLPACSFVVRIKV
Subjt:  VSADISNLPACSFVVRIKV

A0A6J1I0Q5 trafficking protein particle complex subunit 6B8.6e-63100Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIKV
        VSADISNLPACSFVVRIKV
Subjt:  VSADISNLPACSFVVRIKV

SwissProt top hitse value%identityAlignment
F1QMV3 Trafficking protein particle complex subunit 6b6.2e-2648.72Show/hide
Query:  ERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAV
        + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT++S              G+     A    L F CG++RGALSN+G+   V
Subjt:  ERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAV

Query:  SADISNLPACSFVVRIK
        +A++S +PAC F V I+
Subjt:  SADISNLPACSFVVRIK

Q32L78 Trafficking protein particle complex subunit 6B2.8e-2650.88Show/hide
Query:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD
        RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+A+
Subjt:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD

Query:  ISNLPACSFVVRIK
        +S++PAC F V I+
Subjt:  ISNLPACSFVVRIK

Q78XR0 Trafficking protein particle complex subunit 6A2.5e-1938.98Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA
        +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L  M   P              +  +     L F CG++ GAL  LG    
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCA

Query:  VSADISNLPACSFVVRIK
        V+A +++LPAC F V I+
Subjt:  VSADISNLPACSFVVRIK

Q86SZ2 Trafficking protein particle complex subunit 6B2.8e-2650.88Show/hide
Query:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD
        RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+A+
Subjt:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD

Query:  ISNLPACSFVVRIK
        +S++PAC F V I+
Subjt:  ISNLPACSFVVRIK

Q9D289 Trafficking protein particle complex subunit 6B3.1e-2549.12Show/hide
Query:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD
        RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S                 +  +  S +L F CG+IRG LSNLGI   V+A+
Subjt:  RFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD

Query:  ISNLPACSFVVRIK
        +S++PAC F V I+
Subjt:  ISNLPACSFVVRIK

Arabidopsis top hitse value%identityAlignment
AT3G05000.1 Transport protein particle (TRAPP) component1.9e-5481.51Show/hide
Query:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-PQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPC
        MERPRF+DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  + E+QD S  GE+KAAQA SM+LYFPCGIIRG LSNLGIPC
Subjt:  MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-PQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPC

Query:  AVSADISNLPACSFVVRIK
        AVSADIS+LP CSFV+R+K
Subjt:  AVSADISNLPACSFVVRIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAG
AGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTCGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAG
CTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCA
TGTTCATTTGTTGTTCGCATAAAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAG
AGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTCGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGCAG
CTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCA
TGTTCATTTGTTGTTCGCATAAAGGTTTGATGTCTGTGTGGGACAATGAAGATGCGCTACGTCCTCAACGCCGCCTCCAATTGTAATGCCTTCTTTCTTTCTTTCTTCTG
TTTACTTTCTTTTTTACCTTTCTCTATTTCTCTCTCCTCTTCTAAACTATTGAAACTTTTAGCACAAAAATATGACCAATGCTTGTGAATGTATGAAAGTCGATAGCAAT
TATTTTTCAGAATCGAGATTTTAGAAGTATGGTGACGTTTATTCCTATTTTACCATTTGGGATGATGGATTTATATATCATGATGGTCACTGGTATAGGTTGTTAAAATC
GTACGAGTTTCTGGATAACTAAATATTGTAGATCTGATAGTTTATGAGAGATCAAT
Protein sequenceShow/hide protein sequence
MERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPA
CSFVVRIKV