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CmoCh10G012000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G012000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L18
Genome locationCmo_Chr10:11743447..11743791
RNA-Seq ExpressionCmoCh10G012000
SyntenyCmoCh10G012000
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]3.0e-5199.12Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.3e-51100Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]8.7e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]7.4e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]1.1e-5097.37Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L188.0e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152868.0e-5095.61Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620256.5e-52100Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691423.6e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERL+LKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679404.2e-5198.25Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A3DA56 50S ribosomal protein L187.8e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L182.7e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L185.9e-1045.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B8EBI9 50S ribosomal protein L187.8e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + KG+ +V    +   KYHG+V A+ D+ REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Q5E898 50S ribosomal protein L187.8e-1045.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + ST + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein8.2e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein8.2e-0727.72Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein6.1e-1031.68Show/hide
Query:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G45020.1 Ribosomal L18p/L5e family protein2.0e-0530.63Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLVLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + KY++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLVLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein1.9e-4378.07Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERL++K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTACCTAAAGCCATATGTCTTGAAAATGCACTTCACAAACAAGTATGTTAGTGCCCAAGTGATCCACTC
CGAAACAGCCACGGTTGCTTCAGCTGCAAGCTCCCAGGAGAAGGCGCTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GCGAGAGGCTTGTGCTCAAGGGAATCCCAGCTGTTTGTGTACACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTCGTTGATTCTGTGAGGGAAGCAGGC
ATTAAGCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACCCAGTACCTAAAGCCATATGTCTTGAAAATGCACTTCACAAACAAGTATGTTAGTGCCCAAGTGATCCACTC
CGAAACAGCCACGGTTGCTTCAGCTGCAAGCTCCCAGGAGAAGGCGCTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GCGAGAGGCTTGTGCTCAAGGGAATCCCAGCTGTTTGTGTACACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTCGTTGATTCTGTGAGGGAAGCAGGC
ATTAAGCTGCTTTAA
Protein sequenceShow/hide protein sequence
MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL