; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G012030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G012030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSOSS complex subunit B homolog
Genome locationCmo_Chr10:11772495..11772914
RNA-Seq ExpressionCmoCh10G012030
SyntenyCmoCh10G012030
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]1.3e-6793.53Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]2.2e-72100Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]3.5e-7096.4Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKGMTTM+GQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRL NGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT+NSKKYVKESV+SPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]4.2e-7197.12Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVL+KGMTT+EGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRN+NLVLRAGKRGK+EKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]1.5e-6894.24Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMI+LKDLVPAAQNNVNTQFIVLEKGMT MEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTTNS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein6.1e-6893.53Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

A0A1S3BPN4 SOSS complex subunit B homolog6.1e-6893.53Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

A0A5D3CIR3 SOSS complex subunit B-like protein6.1e-6893.53Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

A0A6J1HAL0 SOSS complex subunit B homolog1.1e-72100Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

A0A6J1HZ66 SOSS complex subunit B homolog1.7e-7096.4Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        MMISLKDLVPAAQNNVNTQFIVLEKGMTTM+GQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRL NGIFSYSRN+NLVLRAGKRGKIEKVGEFNMV
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT+NSKKYVKESV+SPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPIR

SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B11.2e-1239.81Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF
        +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+
Subjt:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSE
         E PN SE
Subjt:  VETPNMSE

Q3SWT1 SOSS complex subunit B11.2e-1239.81Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF
        +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+
Subjt:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSE
         E PN SE
Subjt:  VETPNMSE

Q54X41 SOSS complex subunit B homolog2.6e-1537.96Show/hide
Query:  MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF
        +I + ++ P ++ N+N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++P DILRL  G +S      L L  GK G IEK+GEF   F
Subjt:  MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHW--VPDTTNSKKYVKESVLSPYSRIFP
        VE PN+S   W    D  N K  V     SP+ +  P
Subjt:  VETPNMSEIHW--VPDTTNSKKYVKESVLSPYSRIFP

Q8R2Y9 SOSS complex subunit B11.2e-1239.81Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF
        +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+
Subjt:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSE
         E PN SE
Subjt:  VETPNMSE

Q9BQ15 SOSS complex subunit B11.2e-1239.81Show/hide
Query:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF
        +KD+ P  + N+N  FIVLE G    T +G   +TC+  VAD+T +++  +W +  ++++P DI+RLT G  S  +   L L  G+ G ++K+GEF MV+
Subjt:  LKDLVPAAQNNVNTQFIVLEKGMT--TMEGQN-KTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSE
         E PN SE
Subjt:  VETPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein1.8e-4861.59Show/hide
Query:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV
        M + LKD+VPAAQNN++T+FI+L+K  ++       C +L ADETAAVH QLWG+ECD  E  DI++LTNGIFSY RNS L+LRAGKRGK+EK+GEF + 
Subjt:  MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPI
        FVETPN+SEI W+PD  N K+Y++  V+S YSRIFPP+
Subjt:  FVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAACACACAATTCATAGTATTAGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGACATG
CCAATCACTTGTGGCGGACGAAACAGCAGCAGTTCATTTCCAGCTATGGGGAGAAGAGTGCGATGTCGTTGAGCCGAGCGACATCCTACGCTTGACGAATGGGATATTTT
CCTACAGCCGAAACAGTAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCCGTTCTATCTCCATATTCTCGCATCTTTCCGCCAATCCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGATATCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAACACACAATTCATAGTATTAGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGACATG
CCAATCACTTGTGGCGGACGAAACAGCAGCAGTTCATTTCCAGCTATGGGGAGAAGAGTGCGATGTCGTTGAGCCGAGCGACATCCTACGCTTGACGAATGGGATATTTT
CCTACAGCCGAAACAGTAATCTGGTACTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTTAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATC
CATTGGGTTCCCGACACGACTAACTCGAAAAAGTACGTGAAGGAATCCGTTCTATCTCCATATTCTCGCATCTTTCCGCCAATCCGTTGA
Protein sequenceShow/hide protein sequence
MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI
HWVPDTTNSKKYVKESVLSPYSRIFPPIR