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CmoCh10G012080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G012080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionserine/arginine-rich splicing factor SR30-like
Genome locationCmo_Chr10:11821519..11822336
RNA-Seq ExpressionCmoCh10G012080
SyntenyCmoCh10G012080
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135865.1 serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia]1.6e-2387.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

XP_022135867.1 serine/arginine-rich splicing factor SR30 isoform X2 [Momordica charantia]1.6e-2387.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

XP_022135868.1 serine/arginine-rich splicing factor SR30 isoform X3 [Momordica charantia]1.6e-2387.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

XP_022928780.1 serine/arginine-rich splicing factor SR30-like [Cucurbita moschata]1.6e-2389.06Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE EDI DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

XP_022961397.1 serine/arginine-rich splicing factor SR30-like [Cucurbita moschata]2.8e-41100Show/hide
Query:  MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY
        MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY
Subjt:  MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY

TrEMBL top hitse value%identityAlignment
A0A6J1C1X9 serine/arginine-rich splicing factor SR30 isoform X17.6e-2487.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

A0A6J1C3Z4 serine/arginine-rich splicing factor SR30 isoform X27.6e-2487.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

A0A6J1C630 serine/arginine-rich splicing factor SR30 isoform X37.6e-2487.5Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED+ DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

A0A6J1ESI8 serine/arginine-rich splicing factor SR30-like7.6e-2489.06Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSRNSRTIYVGNLPGDI L EVEDLFYKYG IV+IDLK PPRPPGYAFVE EDI DAEDAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

A0A6J1HA37 serine/arginine-rich splicing factor SR30-like1.4e-41100Show/hide
Query:  MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY
        MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY
Subjt:  MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIY

SwissProt top hitse value%identityAlignment
A2RVS6 Serine/arginine-rich splicing factor SR34A1.4e-1971.88Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MS R SR+IYVGNLPGDI   E+ED+FYKYGRIV+I+LK PPRPP Y FVE E   DAEDAI G
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

F4JHI7 Serine/arginine-rich splicing factor SR34B8.1e-2379.69Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR+SRTIYVGNLPGDI   EVEDLF KYG +V IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

O22315 Serine/arginine-rich-splicing factor SR344.0e-2276.56Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR+SRT+YVGNLPGDI   EVEDLF KYG +V IDLK PPRPPGYAFVE +D  DAEDAI+G
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

Q6NYA0 Serine/arginine-rich splicing factor 1B2.3e-1460.32Show/hide
Query:  SSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        +  N   IYVGNLP DI   +VED+FYKYG I +IDLKN    P +AFVE ED  DAEDA+YG
Subjt:  SSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

Q9XFR5 Serine/arginine-rich splicing factor SR304.7e-2381.25Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR +RTIYVGNLPGDI   EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

Arabidopsis top hitse value%identityAlignment
AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-2376.56Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR+SRT+YVGNLPGDI   EVEDLF KYG +V IDLK PPRPPGYAFVE +D  DAEDAI+G
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

AT1G09140.1 SERINE-ARGININE PROTEIN 303.4e-2481.25Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR +RTIYVGNLPGDI   EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

AT1G09140.2 SERINE-ARGININE PROTEIN 303.4e-2481.25Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR +RTIYVGNLPGDI   EVEDLFYKYG IV+IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

AT4G02430.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-2479.69Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR+SRTIYVGNLPGDI   EVEDLF KYG +V IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG

AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-2479.69Show/hide
Query:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG
        MSSR+SRTIYVGNLPGDI   EVEDLF KYG +V IDLK PPRPPGYAFVE ED  DA+DAIYG
Subjt:  MSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTTTTGTTGCCATTTATTGTTATCCTTTTCAAGATTTTGTGCTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAA
TCTTCCTGGAGATATTCTTTTGAGTGAAGTAGAAGATCTATTTTACAAGTATGGACGTATTGTCAACATTGATTTGAAGAATCCCCCACGCCCACCAGGCTATGCTTTTG
TTGAGTGTGAAGATATTCATGATGCTGAAGACGCGATTTATGGTTGA
mRNA sequenceShow/hide mRNA sequence
TCTCCTCTGTTTTCTCTCTAGCCTTAAAATCACCAGCATGGTGATGATCGATGACTGCGATTATGCCTCCATAGGTTATTCTTCTCTATCACTATTTTAATCTATACGCT
GCTCTTTCTACTGTGTGATGCAATTTTTGTTGCCATTTATTGTTATCCTTTTCAAGATTTTGTGCTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGC
ACTATCTATGTTGGAAATCTTCCTGGAGATATTCTTTTGAGTGAAGTAGAAGATCTATTTTACAAGTATGGACGTATTGTCAACATTGATTTGAAGAATCCCCCACGCCC
ACCAGGCTATGCTTTTGTTGAGTGTGAAGATATTCATGATGCTGAAGACGCGATTTATGGTTGA
Protein sequenceShow/hide protein sequence
MQFLLPFIVILFKILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYAFVECEDIHDAEDAIYG