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CmoCh11G001060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G001060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncyclic nucleotide-gated channel 18
Genome locationCmo_Chr11:553085..554023
RNA-Seq ExpressionCmoCh11G001060
SyntenyCmoCh11G001060
Gene Ontology termsGO:0006874 - cellular calcium ion homeostasis (biological process)
GO:0009860 - pollen tube growth (biological process)
GO:0070588 - calcium ion transmembrane transport (biological process)
GO:0071805 - potassium ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016324 - apical plasma membrane (cellular component)
GO:0005249 - voltage-gated potassium channel activity (molecular function)
GO:0005262 - calcium channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587479.1 Cyclic nucleotide-gated ion channel 18, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1898.08Show/hide
Query:  MLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQGL
        MLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ L
Subjt:  MLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQGL

KAG6589454.1 putative cyclic nucleotide-gated ion channel 16, partial [Cucurbita argyrosperma subsp. sororia]6.4e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

KAG7023138.1 putative cyclic nucleotide-gated ion channel 16, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

XP_022965027.1 probable cyclic nucleotide-gated ion channel 16 [Cucurbita moschata]6.4e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

XP_023515994.1 probable cyclic nucleotide-gated ion channel 16 isoform X1 [Cucurbita pepo subsp. pepo]6.4e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

TrEMBL top hitse value%identityAlignment
A0A061ECH6 Cyclic nucleotide-gated channel 181.2e-1488Show/hide
Query:  MLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MLMKFRTAFVAPNSRVFGR EL MD R+IAMRYLK DFVIDLAA LPLPQ
Subjt:  MLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

A0A6A2XBJ9 Putative cyclic nucleotide-gated ion channel 185.3e-1577.36Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  MLMKFRT F+APNSR+FG+ EL MDPR+IA+RYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

A0A6J1BIB9 cyclic nucleotide-gated ion channel 18-like6.9e-1583.02Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  MLMKFRTAFVAPNSRVFGR EL MD R+IAMRYLK DFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

A0A6J1HJ85 probable cyclic nucleotide-gated ion channel 163.1e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

A0A6J1JGZ0 probable cyclic nucleotide-gated ion channel 163.1e-1584.91Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        MF MLMKFRTAFVAPNSRVFGR +L  DP  IAMRYLKKDFVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

SwissProt top hitse value%identityAlignment
O82226 Probable cyclic nucleotide-gated ion channel 63.1e-1260.38Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +F M ++FRTA+VAP+SRVFGR EL +DP  IA RYL++ F+IDL ++LP+PQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

Q8L7Z0 Cyclic nucleotide-gated ion channel 171.8e-1263.64Show/hide
Query:  MFQMLMKFRTAFVAPNS--RVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  + +KFRT F+APNS  RVFGR EL MDP+ IA RY+K DF+IDL A LPLPQ
Subjt:  MFQMLMKFRTAFVAPNS--RVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

Q9LEQ3 Cyclic nucleotide-gated ion channel 188.6e-1573.58Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  + MKFRTAFVA +SRVFGR EL MD R+IAMRYLK DF+ID+AAMLPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

Q9M0A4 Putative cyclic nucleotide-gated ion channel 91.8e-1262.26Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +F M ++FRTAFVAP+SRVFGR EL +DP  IA RYL++ F+ID  ++LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

Q9SU64 Probable cyclic nucleotide-gated ion channel 162.1e-1367.92Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  +L+KF+TAFV+ +SRVFGR EL MD R+IA+RYLK +FVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

Arabidopsis top hitse value%identityAlignment
AT3G48010.1 cyclic nucleotide-gated channel 161.5e-1467.92Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  +L+KF+TAFV+ +SRVFGR EL MD R+IA+RYLK +FVIDLAA LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

AT4G30360.1 cyclic nucleotide-gated channel 171.3e-1363.64Show/hide
Query:  MFQMLMKFRTAFVAPNS--RVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  + +KFRT F+APNS  RVFGR EL MDP+ IA RY+K DF+IDL A LPLPQ
Subjt:  MFQMLMKFRTAFVAPNS--RVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

AT4G30560.1 cyclic nucleotide gated channel 91.3e-1362.26Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +F M ++FRTAFVAP+SRVFGR EL +DP  IA RYL++ F+ID  ++LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

AT4G30560.2 cyclic nucleotide gated channel 91.3e-1362.26Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +F M ++FRTAFVAP+SRVFGR EL +DP  IA RYL++ F+ID  ++LPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ

AT5G14870.1 cyclic nucleotide-gated channel 186.1e-1673.58Show/hide
Query:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ
        +  + MKFRTAFVA +SRVFGR EL MD R+IAMRYLK DF+ID+AAMLPLPQ
Subjt:  MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAAATGCTTATGAAGTTCCGCACCGCCTTCGTTGCGCCCAATTCTAGGGTTTTTGGCCGCGAGGAGCTTGCTATGGACCCTAGGGATATTGCTATGCGCTATCT
CAAGAAGGATTTTGTTATCGATCTTGCCGCCATGCTTCCCCTGCCTCAGGGTTTAGCAAAATTTAATGTTGCTCGGTTGTTGTCCGAGATCCGTTCTACTATTGCCTAA
mRNA sequenceShow/hide mRNA sequence
TAATAACGGAAGAAAAGAACAACAAACGCTCTGCAAAATTTTGGCTCACCGTATTCCTCTGTTCATCTTCCAAAAGGTCTTCAGTTCTCTCTCTCCGATCATATTTTTCG
TCTTTGCAATGGAAAAATGCATAACATTGCTCATTCTCGATTGGGCGGTCTTCACAAATCCGTTGTAGGATCATATCCTCGAACCAGATTCCGATTTCGTCGTCCGATGG
CATCGCATCTTCCTCGTTACTTGTTTGATCGCGCTCTTCGTCGATCCTCTTTTTCTTTTATTTCTCGATCATTGGCGGCCCTGCTTGAAGGCGATTCAACACTGGATTTG
GCATCGTCGTCACGAAACCATCGTCGATTTGTTCTCCATGTTTCAAATGCTTATGAAGTTCCGCACCGCCTTCGTTGCGCCCAATTCTAGGGTTTTTGGCCGCGAGGAGC
TTGCTATGGACCCTAGGGATATTGCTATGCGCTATCTCAAGAAGGATTTTGTTATCGATCTTGCCGCCATGCTTCCCCTGCCTCAGGGTTTAGCAAAATTTAATGTTGCT
CGGTTGTTGTCCGAGATCCGTTCTACTATTGCCTAATTCTTTGAGATTTGTCGGTGCACCCTATAGGAGCTGCTTGGTATGTGGCATCCATTCAGCCAGCATGAATGTGT
TGGCAGATAGAATGTAGAAAGGAGATGAATACCACACATTCTCATTTTTTTCAATATTAGTGAAGCTATTTTCTTCGATCTATATTGACATATACGAACACATATTTCAC
AAACTATCAAATTCAAAATAGATTCGAC
Protein sequenceShow/hide protein sequence
MFQMLMKFRTAFVAPNSRVFGREELAMDPRDIAMRYLKKDFVIDLAAMLPLPQGLAKFNVARLLSEIRSTIA