; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G001640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G001640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein EMBRYO DEFECTIVE 514-like
Genome locationCmo_Chr11:816148..817179
RNA-Seq ExpressionCmoCh11G001640
SyntenyCmoCh11G001640
Gene Ontology termsGO:0017126 - nucleologenesis (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR044673 - Protein DCL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587539.1 Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4996.36Show/hide
Query:  MELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYW
        MELESTEPKVSGGDS+ANEAAPVTNGDANSKREREEEGADDHAGE KKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYW
Subjt:  MELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFLHYW

Query:  PANLNVNQID
        PANLNVNQ +
Subjt:  PANLNVNQID

KAG7021514.1 Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6297.74Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDS+ANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELFDYFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

XP_022933555.1 protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]5.2e-6398.5Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELFDYFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

XP_022972943.1 protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima]1.4e-6095.49Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGA D+ GEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELF+YFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

XP_023529405.1 protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]1.7e-5893.98Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQL ENGPEVTNS+AEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGA D  GEAKK KVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELFDYFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

TrEMBL top hitse value%identityAlignment
A0A0A0LRN9 Uncharacterized protein8.2e-3872.93Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE ADD   + KK K+EKSVEEERLEK+  DGK EEE  PVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSF SSVELFDYFY  LH+WP NLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

A0A6J1C0K4 protein EMBRYO DEFECTIVE 5143.0e-4878.83Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELEST----EPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEH
        MAEET PQLAEN PEVTNSA EDMELE++    EPK   GDS+ANEAAP TNGDANSKREREEE AD++ GEAKKPKVEKSVEEER+EKVE DGKG+E+ 
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELEST----EPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEH

Query:  GPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        GPVSLGPKSFGSSVE+FDYFY FLHYWPANLN+N+ +
Subjt:  GPVSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

A0A6J1E069 protein EMBRYO DEFECTIVE 514-like3.1e-3770.37Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEP--KVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGP
        MAEETIPQ AEN  EVTN  AEDMELE+TEP  +  G + +ANEAA VTNGDANSKREREEE AD    E KK K+EKSVEE R+EK + DGKGEEE GP
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEP--KVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGP

Query:  VSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        V++GPKSF SS ELFD+FY FLH+WPA LNVNQ +
Subjt:  VSLGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

A0A6J1F569 protein EMBRYO DEFECTIVE 514-like2.5e-6398.5Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELFDYFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

A0A6J1IBL1 protein EMBRYO DEFECTIVE 514-like6.9e-6195.49Show/hide
Query:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
        MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGA D+ GEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS
Subjt:  MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVS

Query:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID
        LGPKSFGSSVELF+YFYNFLHYWPANLNVNQ +
Subjt:  LGPKSFGSSVELFDYFYNFLHYWPANLNVNQID

SwissProt top hitse value%identityAlignment
Q8L557 Protein EMBRYO DEFECTIVE 5142.2e-1138.66Show/hide
Query:  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFD
        EV      DME+E+  PK   GD                KREREE   +++ GE+KK KV +                EE+ GPV LGPK F +SV +FD
Subjt:  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFD

Query:  YFYNFLHYWPANLNVNQID
        YF  FLH+WP +L+VN+ +
Subjt:  YFYNFLHYWPANLNVNQID

Arabidopsis top hitse value%identityAlignment
AT5G62440.1 Protein of unknown function (DUF3223)1.5e-1238.66Show/hide
Query:  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFD
        EV      DME+E+  PK   GD                KREREE   +++ GE+KK KV +                EE+ GPV LGPK F +SV +FD
Subjt:  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFD

Query:  YFYNFLHYWPANLNVNQID
        YF  FLH+WP +L+VN+ +
Subjt:  YFYNFLHYWPANLNVNQID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGA
TTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGATGACCATGCCGGAGAGGCGAAAAAGCCGAAGG
TGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTG
GAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGATTGATTAG
mRNA sequenceShow/hide mRNA sequence
TAATCCGCTACTAGGGTTTTAGTTCTTAAGCCTGTCGGTTCCAACTTCAGAGTATAGTTCGAAATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGT
AACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGGGATGCTAATT
CCAAGCGTGAGAGGGAGGAAGAAGGCGCCGATGACCATGCCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGAT
GGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGATTACTTCTACAACTTTCTTCACTACTGGCCTGCCAA
CTTGAACGTGAACCAGATTGATTAG
Protein sequenceShow/hide protein sequence
MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSV
ELFDYFYNFLHYWPANLNVNQID