; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G001900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G001900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHNH domain-containing protein
Genome locationCmo_Chr11:931562..933832
RNA-Seq ExpressionCmoCh11G001900
SyntenyCmoCh11G001900
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR002711 - HNH endonuclease
IPR003615 - HNH nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138181.1 uncharacterized protein LOC101204599 [Cucumis sativus]1.5e-9592.78Show/hide
Query:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ

Query:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        TRVNRFKS+KDDVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+ S
Subjt:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

XP_008453224.1 PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]1.8e-9694.41Show/hide
Query:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ

Query:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        TRVNRFKS+KDDVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

XP_022933741.1 uncharacterized protein LOC111441065 [Cucurbita moschata]4.0e-109100Show/hide
Query:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
        MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
Subjt:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG

Query:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
Subjt:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

XP_023531696.1 uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo]3.4e-10899.48Show/hide
Query:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
        MSDP DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
Subjt:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG

Query:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
Subjt:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

XP_038878253.1 uncharacterized protein LOC120070538 [Benincasa hispida]1.5e-9592.74Show/hide
Query:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSG+G+ERPRFFDTKAKAICW KAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ

Query:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        TRVNRFKS+++DVDTS+LKGYSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDS
Subjt:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

TrEMBL top hitse value%identityAlignment
A0A0A0LUK3 HNHc domain-containing protein1.2e-9892.47Show/hide
Query:  DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTAD
        DGV TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTAD
Subjt:  DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTAD

Query:  NCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        NCQILQTRVNRFKS+KDDVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+ S
Subjt:  NCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

A0A1S3BVP6 uncharacterized protein LOC103494011 isoform X28.5e-9794.41Show/hide
Query:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ

Query:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        TRVNRFKS+KDDVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

A0A5A7UWI1 HNH endonuclease8.5e-9794.41Show/hide
Query:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQ

Query:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        TRVNRFKS+KDDVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  TRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

A0A6J1EZW3 uncharacterized protein LOC1114410652.0e-109100Show/hide
Query:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
        MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
Subjt:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG

Query:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
Subjt:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

A0A6J1I7G1 uncharacterized protein LOC1114715092.0e-109100Show/hide
Query:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
        MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG
Subjt:  MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGG

Query:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
        ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS
Subjt:  ESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein2.0e-6967.61Show/hide
Query:  TPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQI
        T     ++ P P+      R +   NG ERPRFFD KAK  CWA AD VPGRHPERWRKD AGN+VCKRF NC GCLCFEYDHIVP+SKGGES A+NCQI
Subjt:  TPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQI

Query:  LQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        LQTRVNRFKS +++VD + LK YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Subjt:  LQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

AT3G47490.1 HNH endonuclease9.2e-3547.01Show/hide
Query:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLK
        SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVP+SKGG+ST +NCQ+LQ +VNR K +K D+  S+L 
Subjt:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLK

Query:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
          S   +   +++D+IE+  YG+V R      CR
Subjt:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR

AT3G47490.2 HNH endonuclease4.6e-1852.94Show/hide
Query:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSK
        SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVP+SK
Subjt:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSK

AT3G47490.3 HNH endonuclease3.6e-3140.91Show/hide
Query:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFS--------------------KGGESTADNCQIL
        SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVP+S                    KGG+ST +NCQ+L
Subjt:  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFS--------------------KGGESTADNCQIL

Query:  QTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
        Q +VNR K +K D+  S+L   S   +   +++D+IE+  YG+V R      CR
Subjt:  QTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAA
CGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATG
TCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTT
CAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGA
AATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGT
TGCCATATAATGAAGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAA
CGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCCGGACGACATCCCGAGCGCTGGCGTAAGGACGCCGCTGGTAATG
TCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTT
CAGACGAGAGTAAACAGATTCAAATCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTCACTGATAAGGAGCTTGACATAATTGA
AATGGCTGTTTATGGAGATGTAATCAGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGT
TGCCATATAATGAAGATTCTTCGTAACAAAAAGAAGGCTTGAACCTAAAGCATGTTTTTGCCCCATTTGGTATTAAGATCTATAATTTAATACACTTGCTACAAATAATG
TTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCCATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTTTAGAAGTCTTTAAATCAACTAGATT
ACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATAAATTCTTAAATTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGATATAGCCCTTAAACTTCG
Protein sequenceShow/hide protein sequence
MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQIL
QTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS