CuGenDBv2

Gene ID	CmoCh11G002660
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S28
Genome location	Cmo_Chr11:1308494..1308796
RNA-Seq Expression	CmoCh11G002660
Synteny	CmoCh11G002660
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0055085 - transmembrane transport (biological process) GO:0030490 - maturation of SSU-rRNA (biological process) GO:0006412 - translation (biological process) GO:0006508 - proteolysis (biological process) GO:0006869 - lipid transport (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0005524 - ATP binding (molecular function) GO:0005319 - lipid transporter activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR000289 - Ribosomal protein S28e

Homology

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GenBank top hits

e value

%identity

Alignment

KGN53863.2 hypothetical protein Csa_019174 [Cucumis sativus]

2.6e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]

2.6e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo]

2.6e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]

2.6e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]

2.6e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPR2 Uncharacterized protein

1.3e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

A0A1S3CD61 40S ribosomal protein S28-1

1.3e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

A0A6J1E1S7 40S ribosomal protein S28-1

1.3e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

A0A6J1EZU9 40S ribosomal protein S28-1

1.3e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

A0A6J1HTG7 40S ribosomal protein S28-1

1.3e-20

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

SwissProt top hits

e value

%identity

Alignment

P34789 40S ribosomal protein S28-2

2.6e-18

87.04

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

P46302 40S ribosomal protein S28

3.0e-19

88.89

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

Q6PBK3 40S ribosomal protein S28

5.0e-14

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Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

Q90YP3 40S ribosomal protein S28

5.0e-14

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Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

Q9SR73 40S ribosomal protein S28-1

6.7e-19

90.74

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

Arabidopsis top hits

e value

%identity

Alignment

AT3G10090.1 Nucleic acid-binding, OB-fold-like protein

4.8e-20

90.74

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein

4.8e-20

90.74

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

AT5G64140.1 ribosomal protein S28

1.8e-19

87.04

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTL

Sequences

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CDS sequence

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ATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTA
CATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTTTCCCAGTTCCCCGGTTTGCAGTTGCTAAATGTTATCCTTTTATCTTACCTACAAATAG
AATGCTTTACATCATTTTTCCCTATTGAAGTGTGA

mRNA sequence

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Protein sequence

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MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLSQFPGLQLLNVILLSYLQIECFTSFFPIEV

CmoCh11G002660 (gene) of Cucurbita moschata (Rifu) v1 genome