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CmoCh11G002950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G002950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMRP-S28 domain-containing protein
Genome locationCmo_Chr11:1421292..1422316
RNA-Seq ExpressionCmoCh11G002950
SyntenyCmoCh11G002950
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR039848 - Ribosomal protein S24/S35, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589616.1 hypothetical protein SDJN03_15039, partial [Cucurbita argyrosperma subsp. sororia]3.1e-6188.32Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEELYETDEEIDDLY+ARDIVMKKMVK+EYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECE+ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

KAG7021628.1 hypothetical protein SDJN02_15354, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6392.7Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        MKIDKYFKGDEEALPSILEAILQRKLGGK E TDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECEQILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

KAG7023307.1 hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-6187.59Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEELYETDEEIDDLY+ RDIVMKKMVK+EYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECE+ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

XP_022135439.1 uncharacterized protein LOC111007394 [Momordica charantia]3.6e-6289.05Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+I+KYFKGDEEALPSILEAILQRKL GKHE TDDEL+EELRMQPLDDVKDKEFESDFEELYETDEEIDDLY+ARDIVMKKMVKDEYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECE ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

XP_022933107.1 uncharacterized protein LOC111439871 [Cucurbita moschata]1.2e-6594.16Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        DAIKHGILKDTKECEQILEDMLSWDKLLP+  + +++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

TrEMBL top hitse value%identityAlignment
A0A067E7F8 MRP-S28 domain-containing protein1.1e-5679.71Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+IDKYFKGDEEALPSILEAILQR+L GKHE TDDEL EELR++PLDDVKD+EFESDFEELY TDEEIDDLYSARD V+KKMVKDEYFNMDDKKWDE++ 
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQR
        +A++HG LKDT+ECE+ILEDMLSWDKLLP+  + K+++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQR

A0A6J1C1G2 uncharacterized protein LOC1110073941.8e-6289.05Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+I+KYFKGDEEALPSILEAILQRKL GKHE TDDEL+EELRMQPLDDVKDKEFESDFEELYETDEEIDDLY+ARDIVMKKMVKDEYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECE ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

A0A6J1E1S5 uncharacterized protein LOC1114300484.3e-6187.59Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEELYETDEEIDDLY+ RDIVMKKMVK+EYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHGILKDTKECE+ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

A0A6J1EY83 uncharacterized protein LOC1114398715.8e-6694.16Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        DAIKHGILKDTKECEQILEDMLSWDKLLP+  + +++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

A0A6J1JL06 uncharacterized protein LOC1114855535.6e-6187.59Show/hide
Query:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE
        M+IDKYFKGDEEALPSILEAILQRKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEELYETDEEID+LY+ARDIVMKKMVK+EYFNMDDKKWDELVE
Subjt:  MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVE

Query:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
        D IKHG LKDTKECE+ILEDMLSWDKLLP+  + K++
Subjt:  DAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown6.7e-0639.13Show/hide
Query:  GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELYETDEEIDDL
        G+E+A+P + EA++ RKL GKH+ +DDE+++ +R  P++D  K  + +SD E     +  ++D E DDL
Subjt:  GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELYETDEEIDDL

AT1G73770.2 FUNCTIONS IN: molecular_function unknown6.7e-0639.13Show/hide
Query:  GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELYETDEEIDDL
        G+E+A+P + EA++ RKL GKH+ +DDE+++ +R  P++D  K  + +SD E     +  ++D E DDL
Subjt:  GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELYETDEEIDDL

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial9.9e-4257.25Show/hide
Query:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV
        +I+KYF +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFEE + TDEE++DLY++ + V +KM K+E+FNMDDKKWD ++
Subjt:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV

Query:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
         + I+HG L DTKECE+ILEDML WD+LLP+  + K++
Subjt:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial9.9e-4257.25Show/hide
Query:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV
        +I+KYF +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFEE + TDEE++DLY++ + V +KM K+E+FNMDDKKWD ++
Subjt:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV

Query:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
         + I+HG L DTKECE+ILEDML WD+LLP+  + K++
Subjt:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial5.4e-4055.8Show/hide
Query:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV
        +IDK F +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFEE + TDEE++DLY++ + V +KM K E+FNMDD KWD ++
Subjt:  KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELV

Query:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ
         + I+HG L DTK+CE+ILEDML WD+LLP+  + K++
Subjt:  EDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCACTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAAGGTACGGATGATGAACT
TGTTGAAGAACTACGAATGCAACCATTGGATGATGTGAAGGACAAAGAATTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACGATCTTTACAGTG
CTAGAGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGCAATTAAGCATGGGATCCTGAAGGAC
ACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGAAACAAGTAGAAGCAAAATTCAACGAGCTAGGGGATTTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCACTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAAGGTACGGATGATGAACT
TGTTGAAGAACTACGAATGCAACCATTGGATGATGTGAAGGACAAAGAATTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACGATCTTTACAGTG
CTAGAGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGCAATTAAGCATGGGATCCTGAAGGAC
ACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGAAACAAGTAGAAGCAAAATTCAACGAGCTAGGGGATTTGTGTGA
Protein sequenceShow/hide protein sequence
MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKD
TKECEQILEDMLSWDKLLPETSRSKIQRARGFV