CuGenDBv2

Gene ID	CmoCh11G002960
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	MRP-S28 domain-containing protein
Genome location	Cmo_Chr11:1422375..1423731
RNA-Seq Expression	CmoCh11G002960
Synteny	CmoCh11G002960
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005763 - mitochondrial small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR019349 - Ribosomal protein S24/S35, mitochondrial, conserved domain IPR039848 - Ribosomal protein S24/S35, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7023307.1 hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-79

93.25

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLR NPQF+ERLRAKKMG Q S
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS

XP_022135439.1 uncharacterized protein LOC111007394 [Momordica charantia]

4.9e-79

91.52

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
        ERFEHREENRKDCLRTL+SLIEEAGKANKLVEDAR SYVKERLR NPQF+ERLRAKKMG Q S P
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

XP_022921942.1 uncharacterized protein LOC111430048 [Cucurbita moschata]

2.9e-79

93.25

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLR NPQF+ERLRAKKMG Q S
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS

XP_022933107.1 uncharacterized protein LOC111439871 [Cucurbita moschata]

1.1e-89

100

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

XP_023516875.1 uncharacterized protein LOC111780645 [Cucurbita pepo subsp. pepo]

1.1e-78

92.64

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGK+ELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLR NPQF+ERLRAKKMG Q S
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UTN9 28S ribosomal S35

3.9e-74

87.88

Show/hide

Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        +VMEYGKMMEAE  P FD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDA+T YVKERLR NPQF+ERLR+KKM  Q S P
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

A0A6J1C1G2 uncharacterized protein LOC111007394

2.4e-79

91.52

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
        ERFEHREENRKDCLRTL+SLIEEAGKANKLVEDAR SYVKERLR NPQF+ERLRAKKMG Q S P
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

A0A6J1E1S5 uncharacterized protein LOC111430048

1.4e-79

93.25

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLR NPQF+ERLRAKKMG Q S
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS

A0A6J1EY83 uncharacterized protein LOC111439871

5.1e-90

100

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

A0A6J1JL06 uncharacterized protein LOC111485553

5.3e-79

92.64

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Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MVMEYGKMMEAEGPPKFD TDV DNKKDLD+PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVK LGLS YQFRRLRELVGKRYHPGK+ELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS
        ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLR NPQF+ERLRAKKMG Q S
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial

7.8e-67

76.28

Show/hide

Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MV++YG  MEAEGPP+F  TD +D   DLD+PPG+GPILRWQ+R+VFAPGGDAWHPKNRKVK+SVTVK LGLS +Q +RLRELVGKRYH GKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK
        ERFEHREENRKDCLRTL+ LIEEAGKANK+ ED RTSYVK+RLR NP F+++L+AK
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial

7.8e-67

76.28

Show/hide

Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MV++YG  MEAEGPP+F  TD +D   DLD+PPG+GPILRWQ+R+VFAPGGDAWHPKNRKVK+SVTVK LGLS +Q +RLRELVGKRYH GKDELT  TS
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK
        ERFEHREENRKDCLRTL+ LIEEAGKANK+ ED RTSYVK+RLR NP F+++L+AK
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial

1.9e-65

Show/hide

Query:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS
        MV++YG  MEAEGPP+F  TD +D   DLD+P G+GPILRWQ+R+VFAPGGDAWHPKNRKVK+SVTVK LGLSN+Q +RLRELVGKRYH GKDELT  T 
Subjt:  MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTS

Query:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK
        ERFEHREENRKDCLRTL+ LIEEAGKANK+ ED RTSYVK+RLR +P F+++L+AK
Subjt:  ERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAK

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGTGATGGAATATGGAAAGATGATGGAGGCAGAAGGTCCCCCCAAGTTTGATGGAACAGATGTGGCAGATAACAAAAAAGACTTGGATGAGCCGCCAGGTGAAGGGCC
AATTCTTAGGTGGCAAACAAGGGTTGTGTTTGCACCAGGTGGGGATGCATGGCATCCCAAAAACCGAAAAGTGAAATTATCTGTTACTGTGAAGGGGCTTGGTTTATCAA
ACTACCAATTCCGTCGACTAAGGGAATTGGTTGGCAAGCGATATCATCCTGGGAAAGATGAGCTTACCTCATTCACTAGTGAGAGGTTTGAACACAGAGAGGAAAATAGA
AAGGATTGCCTTAGGACTCTTTTTTCTCTAATTGAGGAAGCTGGGAAAGCCAACAAACTTGTAGAGGATGCTCGAACTTCATATGTGAAGGAGAGGCTGCGTGTGAATCC
CCAGTTTATTGAGAGGCTGCGTGCTAAGAAAATGGGCTTGCAACCATCATGCCCTTAATCTGCTTCATTGTTTGATTCGTGATGCTGTTGAAAAGAAGAATACACATTTG
GCTCAACATTTTTGGTGAAGAAGTATTTTTTTCATTGGTTTTTACAAAAAAAAAGTTACAAAATTCTAGAACATGTCCATCAATTTTGATTTTGTCATCAATAGCGATGT
TTTGACCCCTTGGAACTACCTTTACGACTATAGGAACTAGGAATTAATAATGTATCTTAATTATGTACTTTTCTATTGTGCTTTTTCATGAACATATATGGAAATTCTAA
ATGAATGAGAGGTTCCCAAGAGAGGAATACGAATCTCCAAAACTCCGATAGTTTCAAATTTTTTGGATGAG

Protein sequence

Show/hide protein sequence

MVMEYGKMMEAEGPPKFDGTDVADNKKDLDEPPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSVTVKGLGLSNYQFRRLRELVGKRYHPGKDELTSFTSERFEHREENR
KDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNPQFIERLRAKKMGLQPSCP

CmoCh11G002960 (gene) of Cucurbita moschata (Rifu) v1 genome