; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G003300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G003300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger CCHC domain-containing protein 7-like isoform X2
Genome locationCmo_Chr11:1610023..1613842
RNA-Seq ExpressionCmoCh11G003300
SyntenyCmoCh11G003300
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021663.1 Cold shock protein 1 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-16698.31Show/hide
Query:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVA
        A+GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPS TKGSKRNIEVA
Subjt:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVA

Query:  SGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFN
        SG ESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFN
Subjt:  SGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFN

Query:  GTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        GTSMNNNWNSPVTPSRWDHGYYTEY GHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTP+SFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  GTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

XP_022933987.1 uncharacterized protein LOC111441232 isoform X1 [Cucurbita moschata]2.4e-16898.67Show/hide
Query:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR
        +LAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK   GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR
Subjt:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR

Query:  NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP
        NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP
Subjt:  NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP

Query:  RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY
        RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY
Subjt:  RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY

Query:  G
        G
Subjt:  G

XP_022933989.1 uncharacterized protein LOC111441232 isoform X2 [Cucurbita moschata]2.7e-16798.66Show/hide
Query:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI
        A+GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK   GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI
Subjt:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI

Query:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN
        EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN
Subjt:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN

Query:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

XP_022933990.1 uncharacterized protein LOC111441232 isoform X3 [Cucurbita moschata]5.8e-17099.66Show/hide
Query:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE
        +LAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE
Subjt:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE

Query:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
        VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
Subjt:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF

Query:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

XP_023531111.1 zinc finger CCHC domain-containing protein 7-like isoform X3 [Cucurbita pepo subsp. pepo]1.6e-16798.66Show/hide
Query:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE
        +LAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPS TKGSKRNIE
Subjt:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE

Query:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
        VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELS HKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
Subjt:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF

Query:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FNGTSMNNNWNSPVTPSRWDH YYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

TrEMBL top hitse value%identityAlignment
A0A6J1F1A8 uncharacterized protein LOC111441232 isoform X21.3e-16798.66Show/hide
Query:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI
        A+GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK   GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI
Subjt:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI

Query:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN
        EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN
Subjt:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN

Query:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

A0A6J1F6D8 uncharacterized protein LOC111441232 isoform X32.8e-17099.66Show/hide
Query:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE
        +LAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE
Subjt:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIE

Query:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
        VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF
Subjt:  VASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNF

Query:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

A0A6J1F6E2 uncharacterized protein LOC111441232 isoform X11.2e-16898.67Show/hide
Query:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR
        +LAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK   GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR
Subjt:  ELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKR

Query:  NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP
        NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP
Subjt:  NIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGP

Query:  RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY
        RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY
Subjt:  RNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSY

Query:  G
        G
Subjt:  G

A0A6J1IF04 uncharacterized protein LOC111472161 isoform X12.1e-15794.65Show/hide
Query:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI
        A+GGKKNREEASGAASPSPCYRCGEEGHFAREC SSAKVDKKAGPFVRECTISAK   GGKKNREDASGAASPNPCYRCGEDGHFSRECPS TKGSKRNI
Subjt:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAK---GGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNI

Query:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN
        EVASGAESTNSCYRCGGEGHFARECTSSTKG K+ R+LSN KSRSKT E YHMGSKSAPHNLAKAHSKKKKINY+EKYTNLPRKSGQKGRWMMEDPG RN
Subjt:  EVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRN

Query:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        FFNGTSMNNNWNSPVTPSRWDHGYYTEYPG YASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  FFNGTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

A0A6J1IF09 zinc finger CCHC domain-containing protein 7-like isoform X25.0e-15995.61Show/hide
Query:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVA
        A+GGKKNREEASGAASPSPCYRCGEEGHFAREC SSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPS TKGSKRNIEVA
Subjt:  AQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVA

Query:  SGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFN
        SGAESTNSCYRCGGEGHFARECTSSTKG K+ R+LSN KSRSKT E YHMGSKSAPHNLAKAHSKKKKINY+EKYTNLPRKSGQKGRWMMEDPG RNFFN
Subjt:  SGAESTNSCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFN

Query:  GTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
        GTSMNNNWNSPVTPSRWDHGYYTEYPG YASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG
Subjt:  GTSMNNNWNSPVTPSRWDHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYG

SwissProt top hitse value%identityAlignment
O42395 Cellular nucleic acid-binding protein8.3e-1032.56Show/hide
Query:  PSPCYRCGEEGHFARECTSSAKVDK------KAGPFVRECTISAKGGKKNREDA-------------SGAASPNPCYRCGEDGHFSRECPS---FTKGSK
        P  CYRCGE GH A++C    + DK      + G   ++C    K  K+ RE                  A    CY CGE GH  ++C     +  G  
Subjt:  PSPCYRCGEEGHFARECTSSAKVDK------KAGPFVRECTISAKGGKKNREDA-------------SGAASPNPCYRCGEDGHFSRECPS---FTKGSK

Query:  RNIEVASGAESTNSCYRCGGEGHFARECT
         ++ +     S  +CYRCG  GH ARECT
Subjt:  RNIEVASGAESTNSCYRCGGEGHFARECT

O65639 Cold shock protein 11.0e-1233.58Show/hide
Query:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKK---------------AGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECP
        GG   R    G      CY CG+ GHFAR+CTS+   D++                G   R+CT  + G    R    G    + CY CG+ GHF+R+C 
Subjt:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKK---------------AGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECP

Query:  SFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS
                   V SG   + +CY CGG GH AR+C +
Subjt:  SFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS

Q04832 DNA-binding protein HEXBP1.5e-1436.76Show/hide
Query:  EASGAASPSPCYRCGEEGHFARECTSSAKVDK----------KAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGS------
        ++ G    + C+RCGEEGH +REC + A+             +AG   R+C  SAK          GAA    CY+CG++GH SR+CPS   GS      
Subjt:  EASGAASPSPCYRCGEEGHFARECTSSAKVDK----------KAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGS------

Query:  KRNIEVASGAES-TNSCYRCGGEGHFARECTSSTKG
        KR    A G  S   +CY+CG  GH +R+C +   G
Subjt:  KRNIEVASGAES-TNSCYRCGGEGHFARECTSSTKG

Q3T0Q6 Cellular nucleic acid-binding protein2.4e-0931.75Show/hide
Query:  PSPCYRCGEEGHFAREC---TSSAKVDKKAGPFVRECTISAKGGKKNREDA-------------SGAASPNPCYRCGEDGHFSRECPS---FTKGSKRNI
        P  CYRCGE GH A++C     +     + G   ++C    K  K+ RE                  A    CY CGE GH  ++C     +  G   ++
Subjt:  PSPCYRCGEEGHFAREC---TSSAKVDKKAGPFVRECTISAKGGKKNREDA-------------SGAASPNPCYRCGEDGHFSRECPS---FTKGSKRNI

Query:  EVASGAESTNSCYRCGGEGHFARECT
         +     S  +CYRCG  GH ARECT
Subjt:  EVASGAESTNSCYRCGGEGHFARECT

Q94C69 Cold shock domain-containing protein 32.0e-1130.34Show/hide
Query:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSA-------------------KVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFS
        GG  N++E S   S   C+ CGE GH A++C   +                    +    G F R+C  S  G         G     PCY CGE GH +
Subjt:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSA-------------------KVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFS

Query:  RECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKG
        ++C   + G++       G+   + CY CGG GHFAR+C  +  G
Subjt:  RECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKG

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 31.4e-1230.34Show/hide
Query:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSA-------------------KVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFS
        GG  N++E S   S   C+ CGE GH A++C   +                    +    G F R+C  S  G         G     PCY CGE GH +
Subjt:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSA-------------------KVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFS

Query:  RECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKG
        ++C   + G++       G+   + CY CGG GHFAR+C  +  G
Subjt:  RECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKG

AT3G42860.1 zinc knuckle (CCHC-type) family protein9.3e-1733.56Show/hide
Query:  GKKNREEASGAASPSPCYRCGEEGHFARECT----------SSAKVD----KKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSF
        G  +      A + +PCY+CG+EGH+AR+CT          +SA  D     K G + R+CT  +   K        ++S   CY+CG+ GH+SR+C   
Subjt:  GKKNREEASGAASPSPCYRCGEEGHFARECT----------SSAKVD----KKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSF

Query:  TKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS----STKGGKRNRE
        +   +     A    ST  CY+CG  GH++R+CTS    +   GKR R+
Subjt:  TKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS----STKGGKRNRE

AT3G43590.1 zinc knuckle (CCHC-type) family protein2.9e-2632.63Show/hide
Query:  CYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFA
        CYRCG+ GH    C              R    S +      E    +   + CYRCGE+GHF+RECP     +  +I  + G ES   CYRC G GHFA
Subjt:  CYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFA

Query:  RECTSSTKGGKRNRELS--NHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFNGTSMNNNWNSPVTPSRW
        REC +S++  KR+RE S  +HKSR K +E     S     N      KKKK + +E+    PRK   +G W+ E+P   +F  G        SP+TPS +
Subjt:  RECTSSTKGGKRNRELS--NHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFNGTSMNNNWNSPVTPSRW

Query:  DHGYYTEYPGHYASPQF----------SGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRR
        +    T    +Y SP+F          S R+ S P  S +  S Q     + LH            P++G  A+R+  F+    R
Subjt:  DHGYYTEYPGHYASPQF----------SGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRR

AT4G36020.1 cold shock domain protein 17.4e-1433.58Show/hide
Query:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKK---------------AGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECP
        GG   R    G      CY CG+ GHFAR+CTS+   D++                G   R+CT  + G    R    G    + CY CG+ GHF+R+C 
Subjt:  GGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKK---------------AGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECP

Query:  SFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS
                   V SG   + +CY CGG GH AR+C +
Subjt:  SFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS

AT4G38680.1 glycine rich protein 27.4e-0633.33Show/hide
Query:  GGKKNREEASGAASPSPCYRCGEEGHFARECT-SSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPS
        GG        G    S CY+CGE GH AR+C+          G +         GG        G      CY CGE GHF+R+C S
Subjt:  GGKKNREEASGAASPSPCYRCGEEGHFARECT-SSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTGCTCAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTGCATCACCTAGCCCATGCTATAGGTGTGGTGAAGAAGGGCATTTTGCCCGTGAATGCAC
TAGTTCCGCCAAGGTAGACAAAAAAGCAGGGCCTTTTGTCCGTGAGTGCACAATTTCTGCCAAGGGTGGGAAGAAGAATCGGGAGGATGCCTCCGGTGCTGCATCACCCA
ACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGAGTGCCCAAGTTTCACCAAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCGCTGAGTCAACTAAC
TCATGCTATAGATGTGGTGGAGAAGGGCATTTTGCCCGAGAGTGCACAAGTTCTACCAAGGGTGGCAAGAGGAATCGTGAGTTATCGAACCATAAATCTAGGTCAAAAAC
AGAAGAAACGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGACGAAAAATACACTAACCTGCCTAGGA
AGTCAGGACAAAAGGGTCGCTGGATGATGGAGGATCCGGGTCCTCGTAACTTCTTCAATGGCACATCCATGAATAATAACTGGAATTCTCCTGTTACACCATCTCGGTGG
GATCATGGTTATTATACGGAGTACCCTGGTCACTATGCAAGCCCTCAATTTTCTGGGCGCTATGCAAGCCCTCCTCGATCTTCCGGTTACTATGCAAGTCCTCAATCTCT
CACAAGGGAGCGCACATTACATCCAGGGACTCCAATGTCATTCCAATCCAGTATAGCGCCTCAGAACGGATTCTCGGCATCTAGATTTGGGGGCTTTAGCAATGAAGGAA
GGAGGAAAAGCTATGGATGTTCGACTACGTTGTCGGATGTTTTGGACGGTGACATCGAACACGAGCGACATGGAGCAGGCTCAACACTCTTCTACATTGTTGTTTTTGTC
TGTGCACCCACTTCCACAAGAGCTTCATTTTCTACACAGCATGATTATGGCTGTAAGGGTGTTCTTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTTGCTCAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTGCATCACCTAGCCCATGCTATAGGTGTGGTGAAGAAGGGCATTTTGCCCGTGAATGCAC
TAGTTCCGCCAAGGTAGACAAAAAAGCAGGGCCTTTTGTCCGTGAGTGCACAATTTCTGCCAAGGGTGGGAAGAAGAATCGGGAGGATGCCTCCGGTGCTGCATCACCCA
ACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGAGTGCCCAAGTTTCACCAAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCGCTGAGTCAACTAAC
TCATGCTATAGATGTGGTGGAGAAGGGCATTTTGCCCGAGAGTGCACAAGTTCTACCAAGGGTGGCAAGAGGAATCGTGAGTTATCGAACCATAAATCTAGGTCAAAAAC
AGAAGAAACGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGACGAAAAATACACTAACCTGCCTAGGA
AGTCAGGACAAAAGGGTCGCTGGATGATGGAGGATCCGGGTCCTCGTAACTTCTTCAATGGCACATCCATGAATAATAACTGGAATTCTCCTGTTACACCATCTCGGTGG
GATCATGGTTATTATACGGAGTACCCTGGTCACTATGCAAGCCCTCAATTTTCTGGGCGCTATGCAAGCCCTCCTCGATCTTCCGGTTACTATGCAAGTCCTCAATCTCT
CACAAGGGAGCGCACATTACATCCAGGGACTCCAATGTCATTCCAATCCAGTATAGCGCCTCAGAACGGATTCTCGGCATCTAGATTTGGGGGCTTTAGCAATGAAGGAA
GGAGGAAAAGCTATGGATGTTCGACTACGTTGTCGGATGTTTTGGACGGTGACATCGAACACGAGCGACATGGAGCAGGCTCAACACTCTTCTACATTGTTGTTTTTGTC
TGTGCACCCACTTCCACAAGAGCTTCATTTTCTACACAGCATGATTATGGCTGTAAGGGTGTTCTTTCGTAA
Protein sequenceShow/hide protein sequence
MELAQGGKKNREEASGAASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRECPSFTKGSKRNIEVASGAESTN
SCYRCGGEGHFARECTSSTKGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNLPRKSGQKGRWMMEDPGPRNFFNGTSMNNNWNSPVTPSRW
DHGYYTEYPGHYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYGCSTTLSDVLDGDIEHERHGAGSTLFYIVVFV
CAPTSTRASFSTQHDYGCKGVLS