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CmoCh11G003960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G003960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein 2-like
Genome locationCmo_Chr11:1972791..1973548
RNA-Seq ExpressionCmoCh11G003960
SyntenyCmoCh11G003960
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0060862 - negative regulation of floral organ abscission (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587760.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4996.4Show/hide
Query:  MEFKHHQLNLGLFLEP--SSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWK
        MEFKHHQLNLGLFLEP  SSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNST+LWK
Subjt:  MEFKHHQLNLGLFLEP--SSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWK

Query:  VETITAAAPLI
        VETITAAAPL+
Subjt:  VETITAAAPLI

KAG7021730.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-4996.33Show/hide
Query:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE
        MEFKHHQLNLGLFLEP  SSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNST+LWKVE
Subjt:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE

Query:  TITAAAPLI
        TITAAAPL+
Subjt:  TITAAAPLI

XP_022921390.1 zinc finger protein 7 [Cucurbita moschata]5.1e-3171.43Show/hide
Query:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW
        MEFKHH QLNL L LEPSS SS         SAPVSP C   RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE+RAYRGDHE+ N+ M S++LW
Subjt:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW

Query:  KVETITAAAPLI
        KVET+TA +PL+
Subjt:  KVETITAAAPLI

XP_023003862.1 zinc finger protein 2-like [Cucurbita maxima]1.1e-4691.74Show/hide
Query:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE
        MEFKHHQLNLGLFLEP      SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKK+REIRAYRGDHETNITMNST+LWKVE
Subjt:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE

Query:  TITAAAPLI
        TITAAAPL+
Subjt:  TITAAAPLI

XP_023531503.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]7.8e-4891.38Show/hide
Query:  MEFKHHQLNLGLFLEP-------SSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNS
        MEFKHHQLNLGLFLEP       SSSSSSSSSSSSSYSA VSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNS
Subjt:  MEFKHHQLNLGLFLEP-------SSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNS

Query:  TNLWKVETITAAAPLI
        T+LWKVETITAAAPL+
Subjt:  TNLWKVETITAAAPLI

TrEMBL top hitse value%identityAlignment
A0A6J0MAN5 zinc finger protein 2-like8.2e-1973.68Show/hide
Query:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI
        +K+HQLNL L LEPSS+SSSSS++SSSY        + RV+ CNYCQRKFYSSQALGGHQNAHKLERTLAKKSRE+
Subjt:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI

A0A6J1BYT1 protein LATE FLOWERING4.2e-2363.64Show/hide
Query:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ--RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIR--AYRGDHETNITM-----
        MEFKH QLNL L LEPSS S SSSS+          C +   RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKKSREIR  AY GD   N+ M     
Subjt:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ--RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIR--AYRGDHETNITM-----

Query:  NSTNLWKVET
        NS +LWK+ET
Subjt:  NSTNLWKVET

A0A6J1E5I0 zinc finger protein 72.5e-3171.43Show/hide
Query:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW
        MEFKHH QLNL L LEPSS SS         SAPVSP C   RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE+RAYRGDHE+ N+ M S++LW
Subjt:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW

Query:  KVETITAAAPLI
        KVET+TA +PL+
Subjt:  KVETITAAAPLI

A0A6J1JAI3 zinc finger protein 7-like4.2e-3171.43Show/hide
Query:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW
        MEFKHH QLNL L LEPSS SS         SAPVSP C   RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE+RAYRGDHE+ N+ M S++LW
Subjt:  MEFKHH-QLNLGLFLEPSSSSSSSSSSSSSYSAPVSP-CSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHET-NITMNSTNLW

Query:  KVETITAAAPLI
        KVET+TA  PL+
Subjt:  KVETITAAAPLI

A0A6J1KNT5 zinc finger protein 2-like5.5e-4791.74Show/hide
Query:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE
        MEFKHHQLNLGLFLEP      SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKK+REIRAYRGDHETNITMNST+LWKVE
Subjt:  MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVE

Query:  TITAAAPLI
        TITAAAPL+
Subjt:  TITAAAPLI

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 23.8e-2176.62Show/hide
Query:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ-RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI
        +K+HQLNL L LEPSS SSSSSSS++S     S C EQ RV+ CNYCQRKFYSSQALGGHQNAHKLERTLAKKSRE+
Subjt:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ-RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI

Q39262 Zinc finger protein 32.3e-1049.33Show/hide
Query:  HQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRA
        H+LNL   ++ ++S  + S++S          +EQ+++ CNYCQR FYSSQALGGHQNAHK ERTLAK+ + + A
Subjt:  HQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRA

Q39263 Zinc finger protein 43.6e-1159.15Show/hide
Query:  NLGLFLEPSS----SSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKS
        N  L LE SS     SS+S SS+        P   +RV+ CNYCQRKFYSSQALGGHQNAHK ERTLAK++
Subjt:  NLGLFLEPSS----SSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKS

Q39266 Zinc finger protein 79.4e-1258.93Show/hide
Query:  RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNL
        RV+ CNYC+RKFYSSQALGGHQNAHK ERT+AK++  +    G H    T  S++L
Subjt:  RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNL

Q42485 Zinc finger protein 14.7e-1150.6Show/hide
Query:  HHQLNLGLFLEPSSSSSS-----------SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR
        H  L LGL L    +++S           SSSS+S +       ++ RV+ CNYCQRKFYSSQALGGHQNAHK ERTLAK+ +
Subjt:  HHQLNLGLFLEPSSSSSS-----------SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 76.7e-1358.93Show/hide
Query:  RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNL
        RV+ CNYC+RKFYSSQALGGHQNAHK ERT+AK++  +    G H    T  S++L
Subjt:  RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNL

AT1G66140.1 zinc finger protein 42.5e-1259.15Show/hide
Query:  NLGLFLEPSS----SSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKS
        N  L LE SS     SS+S SS+        P   +RV+ CNYCQRKFYSSQALGGHQNAHK ERTLAK++
Subjt:  NLGLFLEPSS----SSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKS

AT1G80730.1 zinc-finger protein 13.3e-1250.6Show/hide
Query:  HHQLNLGLFLEPSSSSSS-----------SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR
        H  L LGL L    +++S           SSSS+S +       ++ RV+ CNYCQRKFYSSQALGGHQNAHK ERTLAK+ +
Subjt:  HHQLNLGLFLEPSSSSSS-----------SSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR

AT5G25160.1 zinc finger protein 31.6e-1149.33Show/hide
Query:  HQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRA
        H+LNL   ++ ++S  + S++S          +EQ+++ CNYCQR FYSSQALGGHQNAHK ERTLAK+ + + A
Subjt:  HQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRA

AT5G57520.1 zinc finger protein 22.7e-2276.62Show/hide
Query:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ-RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI
        +K+HQLNL L LEPSS SSSSSSS++S     S C EQ RV+ CNYCQRKFYSSQALGGHQNAHKLERTLAKKSRE+
Subjt:  FKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQ-RVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTAAACACCATCAGCTCAACCTTGGCCTTTTCCTAGAACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTACTCGGCTCCTGTGAGTCCATG
TAGCGAGCAGAGGGTTTACCCATGCAACTATTGCCAGAGGAAGTTTTATAGCTCACAGGCTTTGGGAGGCCACCAAAATGCTCATAAGCTGGAGAGGACTTTGGCGAAGA
AGAGCAGAGAGATAAGGGCATACCGAGGAGATCATGAAACCAATATTACGATGAATTCAACCAATTTGTGGAAAGTTGAGACAATCACAGCTGCAGCACCTTTAATATGT
AGTGATCAGTGGAAATCAATTGAAATCGACCCATTTGAGGGGTTGAATAGAGCTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTAAACACCATCAGCTCAACCTTGGCCTTTTCCTAGAACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTACTCGGCTCCTGTGAGTCCATG
TAGCGAGCAGAGGGTTTACCCATGCAACTATTGCCAGAGGAAGTTTTATAGCTCACAGGCTTTGGGAGGCCACCAAAATGCTCATAAGCTGGAGAGGACTTTGGCGAAGA
AGAGCAGAGAGATAAGGGCATACCGAGGAGATCATGAAACCAATATTACGATGAATTCAACCAATTTGTGGAAAGTTGAGACAATCACAGCTGCAGCACCTTTAATATGT
AGTGATCAGTGGAAATCAATTGAAATCGACCCATTTGAGGGGTTGAATAGAGCTACTTAG
Protein sequenceShow/hide protein sequence
MEFKHHQLNLGLFLEPSSSSSSSSSSSSSYSAPVSPCSEQRVYPCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREIRAYRGDHETNITMNSTNLWKVETITAAAPLIC
SDQWKSIEIDPFEGLNRAT