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CmoCh11G004170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G004170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationCmo_Chr11:2047162..2050780
RNA-Seq ExpressionCmoCh11G004170
SyntenyCmoCh11G004170
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_003542280.1 small nuclear ribonucleoprotein E [Glycine max]5.9e-3997.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKS+KTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

XP_003597961.1 small nuclear ribonucleoprotein E [Medicago truncatula]3.5e-3997.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

XP_020227736.1 small nuclear ribonucleoprotein E [Cajanus cajan]2.7e-3998.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

XP_022135003.1 small nuclear ribonucleoprotein E-like [Momordica charantia]2.0e-39100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

XP_022156313.1 small nuclear ribonucleoprotein E-like [Momordica charantia]5.9e-3997.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

TrEMBL top hitse value%identityAlignment
A0A6J1C3K6 Small nuclear ribonucleoprotein E9.8e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

A0A6J1DT21 Small nuclear ribonucleoprotein E2.9e-3997.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

A0A6J1EQZ2 Small nuclear ribonucleoprotein E9.8e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

A0A6J1I7N4 Small nuclear ribonucleoprotein E9.8e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

G7IMA2 Small nuclear ribonucleoprotein E1.7e-3997.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E6.4e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E6.4e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E6.4e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E6.4e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E6.4e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein7.4e-4092.05Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

AT2G18740.2 Small nuclear ribonucleoprotein family protein4.1e-3090.14Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein7.4e-4092.05Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK

AT5G48870.1 Small nuclear ribonucleoprotein family protein1.6e-0536.36Show/hide
Query:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--LGRILLKGDNITLMMNTG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  I  + ++   L +ILL G+NI +++  G
Subjt:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--LGRILLKGDNITLMMNTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAGGACCT
TAGGATCGAGGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTC
TCCTCAAAGGAGACAACATTACGTTAATGATGAACACGGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
GGTACTTCCACTTTCAAGAAGCGTTCTCTAGGGTTTCGTTTCGTGTCCTGGAAGTCTAACCGGCAAGGTCCTCTCACCTCCTAACCAATTTTGATAGCCATGGCGAGCAC
CAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAGGACCTTAGGATCGAGG
GCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGA
GACAACATTACGTTAATGATGAACACGGGAAAATGA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGK