; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G004260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G004260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IBH1-like 1
Genome locationCmo_Chr11:2101566..2102405
RNA-Seq ExpressionCmoCh11G004260
SyntenyCmoCh11G004260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587785.1 Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia]5.4e-6899.32Show/hide
Query:  MTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRK
        MTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRT NPKITRIMWSSGKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRK
Subjt:  MTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRK

Query:  VLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        VLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
Subjt:  VLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

KAG7035712.1 Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-8498.86Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPS LKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRT NPKITRIMWSSGKIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

XP_022933891.1 transcription factor IBH1-like 1 isoform X2 [Cucurbita moschata]2.0e-86100Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

XP_022968867.1 transcription factor IBH1-like 1 [Cucurbita maxima]4.6e-8397.14Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRT NPKITRIMWSS KIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRKCKKPAAELIAK L RKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYI SSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

XP_023532012.1 transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]1.3e-8296.57Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPS LKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSAD+ALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKI+RIMWSSGKIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRK KKPAAELIA+KLVR+RRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

TrEMBL top hitse value%identityAlignment
A0A1S3B8V1 uncharacterized protein LOC1034873052.3e-5671.74Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI--------NPKITRIMWS
        M+NP+ LK+EFLKKWMMGL+IYTT+N+NMTV +RK AIKLSADIALASSRNCATRWS+A+IA +SVD+ S LVA+ +LGR +        N KITR  WS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI--------NPKITRIMWS

Query:  SGKIVKRSRRV-QRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        SGKIVKRSRRV +R RR+ K  AA  IA++LV++R KVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMR LA+AY  SSS
Subjt:  SGKIVKRSRRV-QRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

A0A6J1E715 transcription factor IBH1-like 11.7e-5973.22Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSS
        MRNPS LKR+FLKKW MGL+IYTT+N+NMTV  RK AIKLSADIALASSRNCATRWS+A+IA TSV DGS LVA+ +LGR +       + KITR  WSS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSS

Query:  GKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIASSS
         KI+KRSRRV R R+KC+KPAAE IAK+LV+KR + LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMRCLA TAY+A  S
Subjt:  GKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIASSS

A0A6J1F0A2 transcription factor IBH1-like 1 isoform X29.6e-87100Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

A0A6J1HUQ3 transcription factor IBH1-like 12.2e-8397.14Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS
        MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRT NPKITRIMWSS KIVKRS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRS

Query:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS
        RRVQRMRRKCKKPAAELIAK L RKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYI SSS
Subjt:  RRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS

A0A6J1JMR3 transcription factor IBH1-like 16.9e-6173.77Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSS
        MRNPS LKR+FLKKW+MGL+IYTT+N+NMTV  RK AIKLSADIALASSRNCATRWS+A+IA TSV DGS LVA+ LLGR +       + KITR  WSS
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSS

Query:  GKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIASSS
        GKI+KRSRRV R R+KC+KPAAE IA++LV+KR + LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMRCLA TAY+A  S
Subjt:  GKIVKRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA-TAYIASSS

SwissProt top hitse value%identityAlignment
Q9M0B9 Transcription factor IBH1-like 11.7e-2743.35Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV
        M+  S +  EFLKKW MGL+I+  S  N +V +RK AIKLSAD+A+AS R   T WS+ALI  T+ +D     ++++ +     IN K+ +      KIV
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV

Query:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA
        +RS+++ R + K     A   AK+LV++R + LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA

Arabidopsis top hitse value%identityAlignment
AT4G30410.1 sequence-specific DNA binding transcription factors1.2e-2843.35Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV
        M+  S +  EFLKKW MGL+I+  S  N +V +RK AIKLSAD+A+AS R   T WS+ALI  T+ +D     ++++ +     IN K+ +      KIV
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV

Query:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA
        +RS+++ R + K     A   AK+LV++R + LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA

AT4G30410.2 sequence-specific DNA binding transcription factors1.2e-2843.35Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV
        M+  S +  EFLKKW MGL+I+  S  N +V +RK AIKLSAD+A+AS R   T WS+ALI  T+ +D     ++++ +     IN K+ +      KIV
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDG---SRLVADVLLGRTINPKITRIMWSSGKIV

Query:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA
        +RS+++ R + K     A   AK+LV++R + LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  KRSRRVQRMRRKCKKPAAELIAKKLVRKRRKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRCLATA

AT5G57780.1 EXPRESSED IN: 18 plant structures1.5e-2040.35Show/hide
Query:  MRNPSCLKREFLKKWMMGLEIYTTSNKN-MTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKR
        M   + +K+EF+KKW+  L +  +S ++ + VT+RKNAI+LS+D+A+A++RN +T WS+ALI+ +               +T N  + R      +I+K+
Subjt:  MRNPSCLKREFLKKWMMGLEIYTTSNKN-MTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKR

Query:  SRRVQRMRRKCK--KPAAELIAKKLVRKRRKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRCLA
        +R   RM+ +C   +      AK  VRKR  +L+ LVPGGE +D+   LI ETLDYI  L+AQVDVMR +A
Subjt:  SRRVQRMRRKCK--KPAAELIAKKLVRKRRKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRCLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCAATCCCAGTTGTTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTGAAATATACACAACCTCCAACAAAAACATGACGGTCACCCAGAGAAAAAACGC
CATAAAATTATCCGCAGATATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGTCAAGCGCTCATCGCCGCCACCTCCGTTGACGACGGAAGCCGCCTCGTGG
CCGATGTCCTTCTGGGCCGGACTATTAACCCCAAAATTACGCGAATTATGTGGAGTAGTGGGAAGATTGTCAAAAGAAGCCGCCGCGTGCAGCGGATGAGAAGAAAATGT
AAGAAGCCGGCGGCGGAGTTGATTGCGAAGAAGTTGGTGCGGAAAAGAAGGAAAGTTCTTCGGGGATTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCATTGATAGA
AGAAACCCTAGACTACATATCCGCGCTTCAAGCTCAAGTGGATGTAATGCGATGCCTTGCGACTGCATACATAGCATCATCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCAATCCCAGTTGTTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTGAAATATACACAACCTCCAACAAAAACATGACGGTCACCCAGAGAAAAAACGC
CATAAAATTATCCGCAGATATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGTCAAGCGCTCATCGCCGCCACCTCCGTTGACGACGGAAGCCGCCTCGTGG
CCGATGTCCTTCTGGGCCGGACTATTAACCCCAAAATTACGCGAATTATGTGGAGTAGTGGGAAGATTGTCAAAAGAAGCCGCCGCGTGCAGCGGATGAGAAGAAAATGT
AAGAAGCCGGCGGCGGAGTTGATTGCGAAGAAGTTGGTGCGGAAAAGAAGGAAAGTTCTTCGGGGATTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCATTGATAGA
AGAAACCCTAGACTACATATCCGCGCTTCAAGCTCAAGTGGATGTAATGCGATGCCTTGCGACTGCATACATAGCATCATCATCATGAATACCCAAACATAATTATAATC
AAACCCCCTTTTTGTTTTGCACATATATGTAGAGCTAAATTTGAGGTTAATGTTAGTGATAGTTTGGGATCATTTTGTGAGTTTTATGTACATAATAAATGTTTATGTAA
GTTAAGACAAATATGAATTTGTTTGGTTCAAAGTTTGAAGCATTTATTTGTGTATTGAATGTGGCGTGTGGATTCCATAATGGAGCATTTAGTTAGGGAAGAAGGCCAAA
TCCAAAGCCGATAGTGTTCATGCATGTTGGAGAATGAGTGTATCGTGAGTTTCTTCAACATTATTCTTTT
Protein sequenceShow/hide protein sequence
MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQALIAATSVDDGSRLVADVLLGRTINPKITRIMWSSGKIVKRSRRVQRMRRKC
KKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAYIASSS