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CmoCh11G004530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G004530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUBP1-associated proteins 1C-like isoform X3
Genome locationCmo_Chr11:2213656..2214470
RNA-Seq ExpressionCmoCh11G004530
SyntenyCmoCh11G004530
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587816.1 hypothetical protein SDJN03_16381, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3262.18Show/hide
Query:  MEKQRRRRFYTDVVLKRAGGTRFLRGLLSLVSIGRSFIEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELI
        M+KQRRRRFYTDVVLKRAG    +      + +  +   +R V     +   +      + L     +  ++  R    I  RETASRRMLEAEIRRELI
Subjt:  MEKQRRRRFYTDVVLKRAGGTRFLRGLLSLVSIGRSFIEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELI

Query:  IEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
        IEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
Subjt:  IEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS

XP_008443847.1 PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo]2.8e-2361.21Show/hide
Query:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS
        RA+DNK    A+S   +SD P++DDS N EL KQRIKEEIT RE   RRMLEAEIRREL++E+EL+I RA G+TEG L+FD  F +R ++  +N I+D S
Subjt:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLN
        SS  LLAVPGS SSLN
Subjt:  SSRGLLAVPGSCSSLN

XP_022926958.1 uncharacterized protein LOC111433915 [Cucurbita moschata]2.8e-6081.71Show/hide
Query:  MEKQRRRRFYTDVVLKRAGGTR----------FLRGLLSLVSIG---RSF------IEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT
        MEKQRRRRFYTDVVLKRAG  +          F    LSL  I     SF        VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT
Subjt:  MEKQRRRRFYTDVVLKRAGGTR----------FLRGLLSLVSIG---RSF------IEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT

Query:  NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
        NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
Subjt:  NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS

XP_022965220.1 uncharacterized protein LOC111465139 isoform X1 [Cucurbita maxima]5.2e-4690.6Show/hide
Query:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS
        VRAVDN+PLLAASSSECSSDHPLRDDSPNAELVKQRIK +ITNRE ASRRMLEAE R ELIIEQELSILRATG TEGLAFDEHF MRMLDLRLN IVDQS
Subjt:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLNS
        SSR LLA PGSCSSLNS
Subjt:  SSRGLLAVPGSCSSLNS

XP_022965226.1 uncharacterized protein LOC111465139 isoform X2 [Cucurbita maxima]1.9e-4085.47Show/hide
Query:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS
        VRAVDN+PLLAASSSECSSDHPLR      ELVKQRIK +ITNRE ASRRMLEAE R ELIIEQELSILRATG TEGLAFDEHF MRMLDLRLN IVDQS
Subjt:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLNS
        SSR LLA PGSCSSLNS
Subjt:  SSRGLLAVPGSCSSLNS

TrEMBL top hitse value%identityAlignment
A0A1S3B9S7 uncharacterized protein LOC1034873431.3e-2361.21Show/hide
Query:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS
        RA+DNK    A+S   +SD P++DDS N EL KQRIKEEIT RE   RRMLEAEIRREL++E+EL+I RA G+TEG L+FD  F +R ++  +N I+D S
Subjt:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLN
        SS  LLAVPGS SSLN
Subjt:  SSRGLLAVPGSCSSLN

A0A5D3B800 UBP1-associated proteins 1C-like isoform X31.3e-2361.21Show/hide
Query:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS
        RA+DNK    A+S   +SD P++DDS N EL KQRIKEEIT RE   RRMLEAEIRREL++E+EL+I RA G+TEG L+FD  F +R ++  +N I+D S
Subjt:  RAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEG-LAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLN
        SS  LLAVPGS SSLN
Subjt:  SSRGLLAVPGSCSSLN

A0A6J1EJN4 uncharacterized protein LOC1114339151.4e-6081.71Show/hide
Query:  MEKQRRRRFYTDVVLKRAGGTR----------FLRGLLSLVSIG---RSF------IEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT
        MEKQRRRRFYTDVVLKRAG  +          F    LSL  I     SF        VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT
Subjt:  MEKQRRRRFYTDVVLKRAGGTR----------FLRGLLSLVSIG---RSF------IEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEIT

Query:  NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
        NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS
Subjt:  NRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS

A0A6J1HL44 uncharacterized protein LOC111465139 isoform X29.2e-4185.47Show/hide
Query:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS
        VRAVDN+PLLAASSSECSSDHPLR      ELVKQRIK +ITNRE ASRRMLEAE R ELIIEQELSILRATG TEGLAFDEHF MRMLDLRLN IVDQS
Subjt:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLNS
        SSR LLA PGSCSSLNS
Subjt:  SSRGLLAVPGSCSSLNS

A0A6J1HN47 uncharacterized protein LOC111465139 isoform X12.5e-4690.6Show/hide
Query:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS
        VRAVDN+PLLAASSSECSSDHPLRDDSPNAELVKQRIK +ITNRE ASRRMLEAE R ELIIEQELSILRATG TEGLAFDEHF MRMLDLRLN IVDQS
Subjt:  VRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRATGRTEGLAFDEHFAMRMLDLRLNHIVDQS

Query:  SSRGLLAVPGSCSSLNS
        SSR LLA PGSCSSLNS
Subjt:  SSRGLLAVPGSCSSLNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAACAAAGAAGACGACGATTTTATACGGATGTAGTTTTGAAAAGGGCCGGTGGGACCCGATTCTTGCGCGGCTTACTTTCATTGGTCAGCATTGGAAGATCATT
TATAGAGGTTCGAGCCGTCGATAACAAGCCACTGCTTGCCGCTTCCAGTTCCGAATGCTCATCCGATCATCCGCTGCGTGACGATTCTCCAAATGCAGAGCTCGTGAAAC
AGAGGATTAAAGAAGAGATAACAAATAGAGAGACTGCAAGCCGTAGAATGCTCGAGGCGGAGATCAGGAGGGAGCTCATTATCGAGCAAGAACTATCGATTCTTAGGGCT
ACTGGGCGGACGGAGGGGTTAGCATTTGATGAGCATTTTGCCATGAGAATGTTGGATCTGAGGCTGAATCACATTGTGGATCAGTCGTCCTCCAGAGGTTTATTAGCGGT
TCCAGGTTCCTGTTCTTCGCTAAACTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAACAAAGAAGACGACGATTTTATACGGATGTAGTTTTGAAAAGGGCCGGTGGGACCCGATTCTTGCGCGGCTTACTTTCATTGGTCAGCATTGGAAGATCATT
TATAGAGGTTCGAGCCGTCGATAACAAGCCACTGCTTGCCGCTTCCAGTTCCGAATGCTCATCCGATCATCCGCTGCGTGACGATTCTCCAAATGCAGAGCTCGTGAAAC
AGAGGATTAAAGAAGAGATAACAAATAGAGAGACTGCAAGCCGTAGAATGCTCGAGGCGGAGATCAGGAGGGAGCTCATTATCGAGCAAGAACTATCGATTCTTAGGGCT
ACTGGGCGGACGGAGGGGTTAGCATTTGATGAGCATTTTGCCATGAGAATGTTGGATCTGAGGCTGAATCACATTGTGGATCAGTCGTCCTCCAGAGGTTTATTAGCGGT
TCCAGGTTCCTGTTCTTCGCTAAACTCGTAA
Protein sequenceShow/hide protein sequence
MEKQRRRRFYTDVVLKRAGGTRFLRGLLSLVSIGRSFIEVRAVDNKPLLAASSSECSSDHPLRDDSPNAELVKQRIKEEITNRETASRRMLEAEIRRELIIEQELSILRA
TGRTEGLAFDEHFAMRMLDLRLNHIVDQSSSRGLLAVPGSCSSLNS