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CmoCh11G004910 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G004910
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Genome locationCmo_Chr11:2371959..2372405
RNA-Seq ExpressionCmoCh11G004910
SyntenyCmoCh11G004910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587852.1 hypothetical protein SDJN03_16417, partial [Cucurbita argyrosperma subsp. sororia]2.3e-8098.65Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPPPTPYSPLNEEQEHLHDTDEA+PSNGCSCFQLFGFGFNRNGNYEEGNLLQQ RGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH

XP_011648475.1 uncharacterized protein LOC105434480 [Cucumis sativus]3.4e-6381.76Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPP TPYSPL ++Q+ L D D++I SNGC CFQLFGFG NRN NYE GNLLQQ++GREEE WMVK+LKK++EVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE
        GKK+RNRFQYDPESYALNFDGG DGE+D   PPIGFSSRFAVPLASRE
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE

XP_022927019.1 uncharacterized protein LOC111433973 [Cucurbita moschata]3.6e-81100Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH

XP_023003195.1 uncharacterized protein LOC111496880 [Cucurbita maxima]5.2e-8097.3Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPPPTPYSPLNEEQEHLHDTDEA+PSNGC+CFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
        G+KQRNRFQYDPESYALNFDGG+DGEDDRPPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH

XP_038876901.1 uncharacterized protein LOC120069255 [Benincasa hispida]1.2e-6885.33Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPP TPYSPLNE+Q+ L D DEA+PSNGC CF+LFGFGFNRNGNYE  NLLQQ++GREEE WMV+KLKK+KEVSEMVAGPKWKNF+RKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGG DGE+D   PPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASREQH

TrEMBL top hitse value%identityAlignment
A0A0A0LTG0 Uncharacterized protein1.6e-6381.76Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPP TPYSPL ++Q+ L D D++I SNGC CFQLFGFG NRN NYE GNLLQQ++GREEE WMVK+LKK++EVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE
        GKK+RNRFQYDPESYALNFDGG DGE+D   PPIGFSSRFAVPLASRE
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE

A0A1S3B8N4 uncharacterized protein LOC1034873831.1e-6282.55Show/hide
Query:  MATHQTRPPPTPYSPLN-EEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYL
        MA+HQTRPP TPYSPLN ++Q+ L D D++I SNGC CFQLFGFG NRN NYE  NLLQQ++GREEE WMVKKLKK+KEVSEMVAGPKWKNFIRKMGGYL
Subjt:  MATHQTRPPPTPYSPLN-EEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYL

Query:  KGKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE
        KGKKQRNRFQYDPESYALNFDGG DGE+D   PPIGFSSRFAVPLASRE
Subjt:  KGKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE

A0A5A7U6Q0 Uncharacterized protein1.1e-6282.55Show/hide
Query:  MATHQTRPPPTPYSPLN-EEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYL
        MA+HQTRPP TPYSPLN ++Q+ L D D++I SNGC CFQLFGFG NRN NYE  NLLQQ++GREEE WMVKKLKK+KEVSEMVAGPKWKNFIRKMGGYL
Subjt:  MATHQTRPPPTPYSPLN-EEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYL

Query:  KGKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE
        KGKKQRNRFQYDPESYALNFDGG DGE+D   PPIGFSSRFAVPLASRE
Subjt:  KGKKQRNRFQYDPESYALNFDGGVDGEDD--RPPIGFSSRFAVPLASRE

A0A6J1EGU0 uncharacterized protein LOC1114339731.7e-81100Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
        GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH

A0A6J1KR34 uncharacterized protein LOC1114968802.5e-8097.3Show/hide
Query:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
        MATHQTRPPPTPYSPLNEEQEHLHDTDEA+PSNGC+CFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK
Subjt:  MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLK

Query:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH
        G+KQRNRFQYDPESYALNFDGG+DGEDDRPPIGFSSRFAVPLASREQH
Subjt:  GKKQRNRFQYDPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)3.7e-0728.66Show/hide
Query:  SPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFN----RNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG-------------
        SP   E +   D  EA+ +    CF +     +    R G+     +    +   +E W ++  ++++E SE+VAGP+WK +IR+ G             
Subjt:  SPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFN----RNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG-------------

Query:  ---GYLKGKKQRNR------FQYDPESYALNFDGGVDG---EDDRPPIGFSSRFAVP
           G   G    NR      F+YD  SY+LNFD G      +D+ P   +S RFA P
Subjt:  ---GYLKGKKQRNR------FQYDPESYALNFDGGVDG---EDDRPPIGFSSRFAVP

AT3G48020.1 unknown protein3.9e-0938.71Show/hide
Query:  QRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG-GYLKGK--KQRNRFQYDPESYALNFDGGVDGEDDRPPIG----FSSRFA-VPLAS
        +   +E  W V+   K++E SE+VAGP+WK FIR+      +G+     ++F+YDP SY L+F+     +DD   +G    FS R+A VP+AS
Subjt:  QRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG-GYLKGK--KQRNRFQYDPESYALNFDGGVDGEDDRPPIG----FSSRFA-VPLAS

AT5G14890.1 NHL domain-containing protein2.3e-0933.81Show/hide
Query:  EQEHLHDTDEAIPSNGCSCFQLFGFGFNR----NGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG------GYLKG---KKQR
        E +   +  EA+ +    CF L   G ++    NG+     +    +   +E W V    K++E SE+VAGPKWK FIR+ G      G + G   + + 
Subjt:  EQEHLHDTDEAIPSNGCSCFQLFGFGFNR----NGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMG------GYLKG---KKQR

Query:  NRFQYDPESYALNFDGGVDG---EDDRPPIGFSSRFAVP
          F+YD  SY+LNFD G      ED+ P   +S RFA P
Subjt:  NRFQYDPESYALNFDGGVDG---EDDRPPIGFSSRFAVP

AT5G25240.1 unknown protein2.1e-1540Show/hide
Query:  DTDEAIPSNGCSCFQLFGFGFNRNGNYE-------EGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYAL
        D +E     GC  F+ F F   R G+ E        G L +++RG     W  +KLK LKE+SE +AGPKWKNFIR      K  ++   F YD ++Y+L
Subjt:  DTDEAIPSNGCSCFQLFGFGFNRNGNYE-------EGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYAL

Query:  NFDGGVDGEDDRPPIGFSSRFAVPL
        NFD G DG+D  P      RF  P+
Subjt:  NFDGGVDGEDDRPPIGFSSRFAVPL

AT5G62865.1 unknown protein2.3e-0942.7Show/hide
Query:  EEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQ---RNRFQYDPESYALNFDGGVDGEDDRPPIG----FSSRFA-VPLAS
        +E  W ++   K++E SE+VAGP+WK FIR+     +  +      +FQYDP SY+LNFD   D ED+   +G    FS+RFA VP+ S
Subjt:  EEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQ---RNRFQYDPESYALNFDGGVDGEDDRPPIG----FSSRFA-VPLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCCATCAAACCAGACCGCCTCCCACGCCTTATTCACCTCTAAACGAGGAACAAGAACACCTTCACGACACCGACGAGGCCATTCCCTCAAATGGGTGCAGCTG
CTTTCAGCTTTTCGGGTTCGGATTCAATCGGAACGGCAATTACGAAGAGGGAAATCTTCTACAGCAGCAGCGGGGACGGGAAGAGGAGTTTTGGATGGTGAAGAAATTGA
AGAAGTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCCAAATGGAAGAACTTCATAAGAAAAATGGGAGGCTATTTGAAGGGGAAAAAACAGAGGAACAGGTTTCAATAT
GACCCTGAAAGCTATGCTCTGAATTTCGATGGCGGGGTTGATGGAGAAGACGATCGCCCCCCAATTGGCTTCTCTTCGAGGTTTGCTGTGCCATTGGCTTCAAGGGAACA
ACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCCATCAAACCAGACCGCCTCCCACGCCTTATTCACCTCTAAACGAGGAACAAGAACACCTTCACGACACCGACGAGGCCATTCCCTCAAATGGGTGCAGCTG
CTTTCAGCTTTTCGGGTTCGGATTCAATCGGAACGGCAATTACGAAGAGGGAAATCTTCTACAGCAGCAGCGGGGACGGGAAGAGGAGTTTTGGATGGTGAAGAAATTGA
AGAAGTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCCAAATGGAAGAACTTCATAAGAAAAATGGGAGGCTATTTGAAGGGGAAAAAACAGAGGAACAGGTTTCAATAT
GACCCTGAAAGCTATGCTCTGAATTTCGATGGCGGGGTTGATGGAGAAGACGATCGCCCCCCAATTGGCTTCTCTTCGAGGTTTGCTGTGCCATTGGCTTCAAGGGAACA
ACATTAA
Protein sequenceShow/hide protein sequence
MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQRGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQY
DPESYALNFDGGVDGEDDRPPIGFSSRFAVPLASREQH