; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G005270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G005270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationCmo_Chr11:2573078..2574469
RNA-Seq ExpressionCmoCh11G005270
SyntenyCmoCh11G005270
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021772.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-6076.22Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_022927502.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]1.7e-6076.22Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_022973901.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]1.1e-5975Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR+A
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]1.5e-5975.61Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]1.5e-5975.61Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein5.5e-4459.38Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSS                                       FEVQV R A+VA 
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X29.4e-4458.75Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSS                                       FEVQV R A+VA 
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X29.4e-4458.75Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSS                                       FEVQV R A+VA 
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHFV
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like8.5e-6176.22Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

A0A6J1I9W9 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like5.5e-6075Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSS                                       FEVQVARKASVAK
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAK

Query:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        LREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR+A
Subjt:  LREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

SwissProt top hitse value%identityAlignment
Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein9.2e-0431.51Show/hide
Query:  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++  GIR+   + F+
Subjt:  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein1.6e-1646.75Show/hide
Query:  FEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        F+V+VA+  SVA+L+ AVE VF    +    + ISW HVW HFCLCY+  +L+++K+ I+  G+ DGD LHFV  ++
Subjt:  FEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

AT3G07860.1 Ubiquitin-like superfamily protein6.5e-0531.51Show/hide
Query:  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++  GIR+   + F+
Subjt:  EVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

AT4G32270.1 Ubiquitin-like superfamily protein1.9e-1734.04Show/hide
Query:  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISW
        RRS  Y ++P   + L+VLKLDGSSFG                                       +QV + A+V +L+ AVE+ F  + ++    KISW
Subjt:  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISW

Query:  PHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        PHVW  FCL Y+  +LI+E   +  FGI+DGD L F+  ++
Subjt:  PHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

AT4G32270.2 Ubiquitin-like superfamily protein5.0e-1331.58Show/hide
Query:  LPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFC
        +P   + L+VLKLDGSSF                                          V + A+V +L+ AVE+ F  + ++    KISWPHVW  FC
Subjt:  LPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFC

Query:  LCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        L Y+  +LI+E   +  FGI+DGD L F+  ++
Subjt:  LCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

AT5G25340.1 Ubiquitin-like superfamily protein5.3e-1533.33Show/hide
Query:  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISW
        RR+  Y +LP+  + LSVLKLDGSS                                       F+V V   A+V  L+ A+E+ F  +   +   KISW
Subjt:  RRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFCGMSMNREDVKISW

Query:  PHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
         HVW HFCLC+   KLI +   I  +G++DGD + F N V+
Subjt:  PHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCT
CCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGACTACGCATTTCTAT
TTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGT
GGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAA
ACGCTTTGGAATCAGGGATGGTGATCTGCTACATTTTGTGAACCGTGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCT
CCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGACTACGCATTTCTAT
TTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGT
GGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAA
ACGCTTTGGAATCAGGGATGGTGATCTGCTACATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGAGATGGCCCAAAAGAATGAATGGATAGAGT
AATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGTCAGATGGGTCTTTTTTTTTTCTTTTTTTTTCTT
GATTTTTTTAACTTTCCTGATGCTAAATTTGAAGCCTTGGTTTATATATATATAACAAGATGAACTACATTTCGTTTGTGCCACATAAGACTTCACTTTCCTTTCGTCCA
ATCCAAAAATGAAGTCCATTAGTTCAGCCTCTAAGGTATTCAAATTGCTCTAAGAAGAGAATAGATGGAAGAATGGCAATGAAGATATGCCCAAGTGATCTGACATTGAT
ACATTTTGCAGGAGAATCTGAGAGGATGAATGCTATTATTGCCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTT
CAGCTGAGATTATATGTATCTGTGGCCTTAATTTATGCACTTAGAAAATTATTTTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTT
CTTTATTAAACAAATAGTTGCCTA
Protein sequenceShow/hide protein sequence
MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFGNLFPPLYGCIHLANLAVLDYAFLFIFQNVWMFCHRLFFEVQVARKASVAKLREAVESVFC
GMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA