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CmoCh11G005410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G005410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionF-box domain-containing protein
Genome locationCmo_Chr11:2639052..2639505
RNA-Seq ExpressionCmoCh11G005410
SyntenyCmoCh11G005410
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050171.1 EIN3-binding F-box protein 1-like [Cucumis melo var. makuwa]2.1e-0466.67Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGA  LA+VGRLC Q+QHLDLVGL GLTDAVL+ LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

KAG6587898.1 hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2496.88Show/hide
Query:  LLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLLVVHQQQSSIEVVEMRHPCMNKGPSS
        L  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLLVVHQQQSSIEVVEMRHPCMNKGPSS
Subjt:  LLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLLVVHQQQSSIEVVEMRHPCMNKGPSS

XP_008443991.1 PREDICTED: EIN3-binding F-box protein 1-like [Cucumis melo]2.1e-0466.67Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGA  LA+VGRLC Q+QHLDLVGL GLTDAVL+ LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

XP_038878709.1 EIN3-binding F-box protein 1-like isoform X1 [Benincasa hispida]1.9e-0571.43Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGAA LA+VGRLCPQ+QHLDLVGL  LTDAVLL LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

XP_038878710.1 EIN3-binding F-box protein 1-like isoform X2 [Benincasa hispida]1.9e-0571.43Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGAA LA+VGRLCPQ+QHLDLVGL  LTDAVLL LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

TrEMBL top hitse value%identityAlignment
A0A1S3B9B1 EIN3-binding F-box protein 1-like1.0e-0466.67Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGA  LA+VGRLC Q+QHLDLVGL GLTDAVL+ LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

A0A2I4F539 EIN3-binding F-box protein 1-like1.7e-0472.22Show/hide
Query:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        FG A LAMVG+LCPQ+QHLDL GL+G+TD+ LL LL
Subjt:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

A0A5A7U9G8 EIN3-binding F-box protein 1-like1.0e-0466.67Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGA  LA+VGRLC Q+QHLDLVGL GLTDAVL+ LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

A0A5D3C522 EIN3-binding F-box protein 1-like1.0e-0466.67Show/hide
Query:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        + +   FGA  LA+VGRLC Q+QHLDLVGL GLTDAVL+ LL
Subjt:  LNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

A0A5J5R8A4 F-box domain-containing protein3.9e-0475Show/hide
Query:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        FG A LAMVGRLCPQ+QH+DL GL G+TDA LL LL
Subjt:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25490.1 EIN3-binding F box protein 12.9e-0450Show/hide
Query:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL
        FG A LA +G+LCPQ++ +DL GL G+T++  L L+
Subjt:  FGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATCATTTCAACAAGTGGTCTCTTGATGCCTCTGTTTGCCTCATGCCTACTCTCCTTAATTCACTGCTGAGTTTTGGTGCTGCAAGGCTAGCCATGGTTGGAAG
ATTGTGCCCTCAGGTTCAGCATCTTGACCTTGTGGGGCTCAATGGTTTAACTGATGCAGTGCTGCTTCTTCTACTGGTAGTCCATCAGCAGCAGAGCTCAATTGAAGTTG
TGGAGATGCGACATCCTTGTATGAACAAGGGACCAAGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATCATTTCAACAAGTGGTCTCTTGATGCCTCTGTTTGCCTCATGCCTACTCTCCTTAATTCACTGCTGAGTTTTGGTGCTGCAAGGCTAGCCATGGTTGGAAG
ATTGTGCCCTCAGGTTCAGCATCTTGACCTTGTGGGGCTCAATGGTTTAACTGATGCAGTGCTGCTTCTTCTACTGGTAGTCCATCAGCAGCAGAGCTCAATTGAAGTTG
TGGAGATGCGACATCCTTGTATGAACAAGGGACCAAGCAGCTGA
Protein sequenceShow/hide protein sequence
MSNHFNKWSLDASVCLMPTLLNSLLSFGAARLAMVGRLCPQVQHLDLVGLNGLTDAVLLLLLVVHQQQSSIEVVEMRHPCMNKGPSS