CuGenDBv2

Gene ID	CmoCh11G005430
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein
Genome location	Cmo_Chr11:2642681..2644392
RNA-Seq Expression	CmoCh11G005430
Synteny	CmoCh11G005430
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7021783.1 rpmJ [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-48

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEI PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

6.3e-49

100

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022971996.1 uncharacterized protein LOC111470644 [Cucurbita maxima]

9.1e-48

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022987917.1 uncharacterized protein LOC111485318 [Cucurbita maxima]

1.5e-42

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEILPSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

3.6e-44

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE P PSLFSRSEVKQE+LPSHSSRTGLASLIPQKHEPTML GWRMGLASIL KK+N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CT08 Ribosomal protein

9.5e-43

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVR+SVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE PSP LFSRSEVKQEILPS+S RTGLASLIPQKHEPT +FGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1EZS5 Ribosomal protein

3.1e-49

100

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1HBF8 Ribosomal protein

4.7e-42

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1I4R0 Ribosomal protein

4.4e-48

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1JBN8 Ribosomal protein

7.3e-43

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEILPSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

7.8e-10

76.32

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ V+R GRV + CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.2e-10

81.58

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

P73300 50S ribosomal protein L36

4.1e-11

81.58

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVRASVKKMC+ CR +RRRGRV + CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Q035A6 50S ribosomal protein L36

1.2e-10

81.58

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Q88XW3 50S ribosomal protein L36

7.8e-10

76.32

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVK MCE C+ +RR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

5.0e-28

61.17

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK
        MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     QE+  LP      GLASL+ ++  PT  FGWR GLASIL+K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK

Query:  KQN
        + N
Subjt:  KQN

AT5G20180.2 Ribosomal protein L36

5.0e-28

61.17

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK
        MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     QE+  LP      GLASL+ ++  PT  FGWR GLASIL+K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK

Query:  KQN
        + N
Subjt:  KQN

ATCG00760.1 ribosomal protein L36

3.1e-09

68.42

Show/hide

Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MK+RASV+K+CE CR +RRRGR+ + CS NP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGATTCTAGGATCCATGATTTGGCCATTTTGTGCTTTCAGTTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCG
AGTATATATATACTGCTCTGCCAACCCCAAACACAAGCAACGCCAAGGCCTATCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGC
AAGAGATTCTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTG
TGGAAGAAACAAAATTAGAGCTTAGTCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGA
TAAAAGATGAAGCACTTCTGCTCTCAGATTTGGTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTT
AAACAACTTTCGACCCGTAAAGTTTGATGTTGTAAACGTCGAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATA
AAAGTCTGAATTCCATTACGATTCAGGAACTTGTTCTAAATGATGAATTTGAGTTCGGAATGTGTTTAAAATGGGATACAAGTGAAGTTGGAAGCAGG

Protein sequence

Show/hide protein sequence

MDSRIHDLAILCFQFMKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASIL
WKKQN

CmoCh11G005430 (gene) of Cucurbita moschata (Rifu) v1 genome