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CmoCh11G006270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G006270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTATA-binding protein-associated factor 2N
Genome locationCmo_Chr11:3000920..3005477
RNA-Seq ExpressionCmoCh11G006270
SyntenyCmoCh11G006270
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587972.1 hypothetical protein SDJN03_16537, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1798.04Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSG RVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

KAG7021862.1 hypothetical protein SDJN02_15590, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1651.67Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE----------------DIEYMQVQLLQHVIGMITGMFL-----------
        MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSG RVGRGSDYEAGE                D+E  +  +L  +IG+++ M +           
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE----------------DIEYMQVQLLQHVIGMITGMFL-----------

Query:  ---ILIVLVISCGAVNLEAG
           I+ + V  C  ++LE G
Subjt:  ---ILIVLVISCGAVNLEAG

XP_004142516.1 uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus]1.7e-1694.12Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRG+DYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

XP_008462733.1 PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo]7.7e-1796.08Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

XP_008462734.1 PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo]2.9e-1696Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAG
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG

TrEMBL top hitse value%identityAlignment
A0A1S3CHL9 uncharacterized protein LOC103501026 isoform X13.7e-1796.08Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

A0A1S3CHP1 uncharacterized protein LOC103501026 isoform X21.4e-1696Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAG
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAG

A0A5D3E321 TATA-binding protein-associated factor 2N3.7e-1796.08Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

A0A6J1HA20 uncharacterized protein LOC111461847 isoform X62.4e-1694.12Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

A0A6J1HBT6 uncharacterized protein LOC111461847 isoform X22.4e-1694.12Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSGGRVGRGSDYEAGE
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAG
TGGCGGCCGAGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGA
TTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGAGACTTCACCCCATTACAGTCGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCGAGGGATAAAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAG
TGGCGGCCGAGTTGGTCGTGGAAGCGATTACGAGGCCGGTGAGGATATAGAATACATGCAGGTTCAGCTTCTCCAACACGTCATCGGGATGATCACCGGTATGTTTCTGA
TTTTGATCGTTCTGGTGATCTCATGCGGGGCCGTGAATTTGGAGGCAGGAGCGATCATGGTAGATATCGAGAGACTTCACCCCATTACAGTCGAAGAATAAGTGGTGGCA
GGCCATATGGGAGAGGTTTTGCTCCTGAGCCATTTAGAGGGGAACGTAGTAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTA
CTCACCTAACAC
Protein sequenceShow/hide protein sequence
MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGGRVGRGSDYEAGEDIEYMQVQLLQHVIGMITGMFLILIVLVISCGAVNLEAGAIMVDIERLHPITVEE