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CmoCh11G006990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G006990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEmbryo defective protein
Genome locationCmo_Chr11:3373906..3374781
RNA-Seq ExpressionCmoCh11G006990
SyntenyCmoCh11G006990
Gene Ontology termsGO:0016192 - vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD6795185.1 hypothetical protein E3N88_06081 [Mikania micrantha]3.5e-0471.05Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
        L +  +CAF   T  IGAAITEQLYKEKYWEDHPG+AV
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
PIA38755.1 hypothetical protein AQUCO_02700158v1 [Aquilegia coerulea]2.7e-0451.79Show/hide
Query:  IVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEVCS----FTPSESSSTRHSPP
        I+ A  + T  IGAAITEQLYKEKYWE+HPG+AV +      + P +     HSPP
Subjt:  IVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEVCS----FTPSESSSTRHSPP
XP_021990537.1 uncharacterized protein At4g29660 [Helianthus annuus]1.6e-0470Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
        L +  VCAF   T  IGAAITEQLYKEKYWEDHPG+AV +
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
XP_022925999.1 PRA1 family protein F3-like isoform X3 [Cucurbita moschata]1.7e-1492.5Show/hide
Query:  EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHGMLI
        EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHG  +
Subjt:  EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHGMLI
XP_024980008.1 uncharacterized protein At4g29660 [Cynara cardunculus var. scolymus]1.6e-0470Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
        L +  VCAF   T  IGAAITEQLYKEKYWEDHPG+AV +
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
TrEMBL top hitse value%identityAlignment
A0A251TQB3 Putative embryo defective protein7.6e-0570Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
        L +  VCAF   T  IGAAITEQLYKEKYWEDHPG+AV +
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEV
A0A2G5D5H7 Uncharacterized protein1.3e-0451.79Show/hide
Query:  IVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEVCS----FTPSESSSTRHSPP
        I+ A  + T  IGAAITEQLYKEKYWE+HPG+AV +      + P +     HSPP
Subjt:  IVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEVCS----FTPSESSSTRHSPP
A0A5N6PMT5 Uncharacterized protein1.7e-0471.05Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
        L +  +CAF   T  IGAAITEQLYKEKYWEDHPG+AV
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
A0A6I9U3X9 uncharacterized protein At4g296601.7e-0471.05Show/hide
Query:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
        L +  +CAF   T  IGAAITEQLYKEKYWEDHPG+AV
Subjt:  LASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAV
A0A6J1EDS5 PRA1 family protein8.1e-1592.5Show/hide
Query:  EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHGMLI
        EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHG  +
Subjt:  EKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHGMLI
SwissProt top hitse value%identityAlignment
Q94K18 Uncharacterized protein At4g296602.1e-0467.86Show/hide
Query:  YSTIYIGAAITEQLYKEKYWEDHPGDAV
        + T  IGAA+TEQLYKEK+WE+HPG  V
Subjt:  YSTIYIGAAITEQLYKEKYWEDHPGDAV
Arabidopsis top hitse value%identityAlignment
AT4G29660.1 embryo defective 27521.5e-0567.86Show/hide
Query:  YSTIYIGAAITEQLYKEKYWEDHPGDAV
        + T  IGAA+TEQLYKEK+WE+HPG  V
Subjt:  YSTIYIGAAITEQLYKEKYWEDHPGDAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATAGTTTTGTTTGTCCACTCCCCATTTCTCTACTACGGATTACGCTACGAATTAGCCTCCGAAATCGTTTGCGCCTTTGGTTACAGTACAATATATATTGGCGC
TGCCATCACCGAGCAACTCTACAAGGAGAAGTATTGGGAAGATCACCCTGGGGATGCTGTAGAAGTTTGTTCTTTCACACCAAGTGAAAGCTCAAGCACTCGCCATTCTC
CTCCTGGTTCATACTGGAAACATGGTATGCTAATCTAA
mRNA sequenceShow/hide mRNA sequence
GCTGCGAATCTTCAAAACAAATGGCCATAGTTTTGTTTGTCCACTCCCCATTTCTCTACTACGGATTACGCTACGAATTAGCCTCCGAAATCGTTTGCGCCTTTGGTTAC
AGTACAATATATATTGGCGCTGCCATCACCGAGCAACTCTACAAGGAGAAGTATTGGGAAGATCACCCTGGGGATGCTGTAGAAGTTTGTTCTTTCACACCAAGTGAAAG
CTCAAGCACTCGCCATTCTCCTCCTGGTTCATACTGGAAACATGGTATGCTAATCTAA
Protein sequenceShow/hide protein sequence
MAIVLFVHSPFLYYGLRYELASEIVCAFGYSTIYIGAAITEQLYKEKYWEDHPGDAVEVCSFTPSESSSTRHSPPGSYWKHGMLI