; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh11G007140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G007140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S16
Genome locationCmo_Chr11:3459261..3461457
RNA-Seq ExpressionCmoCh11G007140
SyntenyCmoCh11G007140
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588049.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6697.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPM AMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNSSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]3.9e-6394.62Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRF TP+K TDDS SSKDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

XP_022933978.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]4.0e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNSSKDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]9.9e-6798.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNSSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

XP_023529314.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]1.7e-6697.69Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRD+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNS+KDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

TrEMBL top hitse value%identityAlignment
A0A5D3CDW9 30S ribosomal protein S161.3e-5986.92Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYY+PLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRF TP+K   DS++ + G+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial1.9e-6394.62Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRF TP+K TDDS SSKDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.9e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNSSKDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

A0A6J1H8S5 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.3e-5990Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        R VDPLSGR  +P+K T+DS S KDGNADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like4.8e-6798.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDPLSGRFTTPQKATDDSNSSKDG+ADS
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S161.6e-1954.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G Y+PL  +D  KR+ L+ +R K+WLSVGAQP+D V R L  AGV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV

A8LMC0 30S ribosomal protein S161.6e-1953.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG Y+PL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  A VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLP

O65686 30S ribosomal protein S16-1, chloroplastic2.4e-3155.96Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSG
         + V P++G
Subjt:  -RPVDPLSG

Q5LNF2 30S ribosomal protein S161.2e-1954.22Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG Y+PL  +D  +R+ ++ ERV+YWLS GAQ +D V R+L  AGV+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial3.4e-5475.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY++PLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDP++GR+   +  T ++N ++    D+
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 161.7e-3255.96Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSG
         + V P++G
Subjt:  -RPVDPLSG

AT5G56940.1 Ribosomal protein S16 family protein2.4e-5575.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY++PLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS
        RPVDP++GR+   +  T ++N ++    D+
Subjt:  RPVDPLSGRFTTPQKATDDSNSSKDGNADS

ATCG00050.1 ribosomal protein S168.5e-0834.57Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCT
AGGTTACTATCATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGC
AGCGAATTCTTTTTAGAGCAGGGGTGCTTCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGTGGACGCTTC
ACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGAACGCTGATTCATAA
mRNA sequenceShow/hide mRNA sequence
TACTTTGGATAAATCTGTGTCATTTCAGTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGTAAGAACAAGCCG
TTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCTAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATCATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGG
TCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTGCTTCCACCACCCCCAATGGTTG
CAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCTCTTAGTGGACGCTTCACAACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGG
AACGCTGATTCATAA
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF
TTPQKATDDSNSSKDGNADS