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CmoCh11G007280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G007280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationCmo_Chr11:3527204..3527970
RNA-Seq ExpressionCmoCh11G007280
SyntenyCmoCh11G007280
Gene Ontology termsGO:0009910 - negative regulation of flower development (biological process)
GO:0010452 - histone H3-K36 methylation (biological process)
GO:0016441 - posttranscriptional gene silencing (biological process)
GO:0051568 - histone H3-K4 methylation (biological process)
GO:1904278 - positive regulation of wax biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7048844.1 unnamed protein product [Microthlaspi erraticum]2.8e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
KAF3530429.1 hypothetical protein DY000_02037040 [Brassica cretica]2.8e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
KAG6588060.1 WD repeat-containing protein VIP3, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1495.83Show/hide
Query:  MSGDSSGELSVDASPDGAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQ
        MSGDSSG LSVDASPDGAVATGSSDRTVMLWDLQMRAAVQTMIKH DQ
Subjt:  MSGDSSGELSVDASPDGAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQ
XP_006294529.2 WD repeat-containing protein VIP3 [Capsella rubella]2.8e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
XP_018451166.1 PREDICTED: WD repeat-containing protein VIP3-like [Raphanus sativus]2.1e-0873.58Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAAVQTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
TrEMBL top hitse value%identityAlignment
A0A178UYC1 (thale cress) hypothetical protein1.4e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
A0A3P6BEU3 WD_REPEATS_REGION domain-containing protein1.4e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
A0A3P6FHN0 WD_REPEATS_REGION domain-containing protein1.4e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
A0A6J0KUJ0 WD repeat-containing protein VIP3-like1.0e-0873.58Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAAVQTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
M4D3T5 WD_REPEATS_REGION domain-containing protein1.4e-0871.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
SwissProt top hitse value%identityAlignment
Q9SZQ5 WD repeat-containing protein VIP33.7e-1171.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
Arabidopsis top hitse value%identityAlignment
AT4G29830.1 Transducin/WD40 repeat-like superfamily protein2.6e-1271.7Show/hide
Query:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL
        MSG +S  LSVDASPD GA+ATGSSDRTV LWDL+MRAA+QTM  H DQ  S+
Subjt:  MSGDSSGELSVDASPD-GAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGGCGATTCAAGTGGGGAGTTGAGTGTTGATGCAAGCCCTGATGGTGCTGTTGCAACAGGTTCAAGCGACAGAACTGTTATGCTTTGGGATCTCCAAATGAGGGC
AGCTGTTCAAACAATGATCAAGCATCGCGATCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGA
TGACGGGCGTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGGCGATTCAAGTGGGGAGTTGAGTGTTGATGCAAGCCCTGATGGTGCTGTTGCAACAGGTTCAAGCGACAGAACTGTTATGCTTTGGGATCTCCAAATGAGGGC
AGCTGTTCAAACAATGATCAAGCATCGCGATCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGA
TGACGGGCGTCGAGTAG
Protein sequenceShow/hide protein sequence
MSGDSSGELSVDASPDGAVATGSSDRTVMLWDLQMRAAVQTMIKHRDQARSLLHAAKCRHLHHHHEEAVADIVMTGVE