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CmoCh11G007350 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh11G007350
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II PsbX
Genome locationCmo_Chr11:3567844..3568200
RNA-Seq ExpressionCmoCh11G007350
SyntenyCmoCh11G007350
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009518 - Photosystem II PsbX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-3880.16Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI
        MAS  AVS+ALPL  A+ KRLSN AFFNPLP    SRSRKAI AAP     LV V SSLKEKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGVVVIAILGAVIGVSNFDPVKRG
        AAGG VV+AILGAVIGVSNFDPVKRG
Subjt:  AAGGVVVIAILGAVIGVSNFDPVKRG

XP_022934016.1 uncharacterized protein LOC111441248 [Cucurbita moschata]1.1e-51100Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
        MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI

Query:  AILGAVIGVSNFDPVKRG
        AILGAVIGVSNFDPVKRG
Subjt:  AILGAVIGVSNFDPVKRG

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]1.4e-3880.16Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI
        MAS   VS+ALPL  A+ KRLSN AFFNPLP    SRSRKAI AAP    RLV V SSLKEKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGVVVIAILGAVIGVSNFDPVKRG
        AAGG VV+AILGAVIGVSNFDPVKRG
Subjt:  AAGGVVVIAILGAVIGVSNFDPVKRG

XP_022968571.1 uncharacterized protein LOC111467755 [Cucurbita maxima]9.0e-5199.15Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
        MASAPAVSMALPL YASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI

Query:  AILGAVIGVSNFDPVKRG
        AILGAVIGVSNFDPVKRG
Subjt:  AILGAVIGVSNFDPVKRG

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]3.9e-3880.33Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MAS  A+SMALPL YA+ K LSNDAFFNPLPS +SRKAI AAP    R+V V SSLKEKAV G+TAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVIAILGAVIGVSNFDPVKR
        G VV+AILGAVIGV+NFDPVKR
Subjt:  GVVVIAILGAVIGVSNFDPVKR

TrEMBL top hitse value%identityAlignment
A0A1S3BRD2 uncharacterized protein LOC1034923568.8e-3677.05Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MAS  AVSMALP  +A+ K LSNDAFFNPLPS +SRK I AAP    R+V V SSLKEKAV G+TAAAL+A+MVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVIAILGAVIGVSNFDPVKR
        G VV+AI GAVIGV+NFDPVKR
Subjt:  GVVVIAILGAVIGVSNFDPVKR

A0A6J1F0M8 uncharacterized protein LOC1114412485.2e-52100Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
        MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI

Query:  AILGAVIGVSNFDPVKRG
        AILGAVIGVSNFDPVKRG
Subjt:  AILGAVIGVSNFDPVKRG

A0A6J1H8G2 uncharacterized protein LOC1114614526.5e-3980.16Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI
        MAS   VS+ALPL  A+ KRLSN AFFNPLP    SRSRKAI AAP    RLV V SSLKEKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGVVVIAILGAVIGVSNFDPVKRG
        AAGG VV+AILGAVIGVSNFDPVKRG
Subjt:  AAGGVVVIAILGAVIGVSNFDPVKRG

A0A6J1HV97 uncharacterized protein LOC1114677554.4e-5199.15Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
        MASAPAVSMALPL YASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVI

Query:  AILGAVIGVSNFDPVKRG
        AILGAVIGVSNFDPVKRG
Subjt:  AILGAVIGVSNFDPVKRG

A0A6J1J9Y5 uncharacterized protein LOC1114848832.7e-3777.78Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI
        MAS   VS+ALPL  A+ KRLSN AFFNPLP    SR RKAI AAP    RLV V SSLKEKA+TG++AAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGVVVIAILGAVIGVSNFDPVKRG
        AAGG VV+AILGAVIGVSNFDPVKRG
Subjt:  AAGGVVVIAILGAVIGVSNFDPVKRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06520.1 photosystem II subunit X2.2e-2358.2Show/hide
Query:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPA----APRLVVVHSSLK-EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MAS  A+S+  PL   +Q R S   F  PLP +  KA+ A    A RL V   +LK +KA+TG++AAAL+A+MVIPE+AEAAG G+SPSLKNFLLSIA+G
Subjt:  MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPA----APRLVVVHSSLK-EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVIAILGAVIGVSNFDPVKR
        G+V+  I+G V+GVSNFDPVKR
Subjt:  GVVVIAILGAVIGVSNFDPVKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGCTCCCGCCGTTTCAATGGCTCTCCCCTTGCCCTACGCCAGCCAGAAGCGGCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTAGGTCTCGCAAGGC
CATCCCCGCCGCTCCAAGGCTCGTTGTCGTCCACTCGTCTTTGAAGGAGAAAGCCGTCACTGGACTTACGGCCGCTGCGCTGTCTGCAGCGATGGTGATTCCCGAGGTTG
CAGAGGCTGCTGGTCCTGGAGTCTCGCCATCGCTCAAGAACTTCTTGCTGAGCATTGCCGCTGGTGGAGTTGTGGTGATCGCCATACTTGGAGCTGTCATCGGCGTCTCG
AACTTCGATCCGGTTAAGCGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGCTCCCGCCGTTTCAATGGCTCTCCCCTTGCCCTACGCCAGCCAGAAGCGGCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTAGGTCTCGCAAGGC
CATCCCCGCCGCTCCAAGGCTCGTTGTCGTCCACTCGTCTTTGAAGGAGAAAGCCGTCACTGGACTTACGGCCGCTGCGCTGTCTGCAGCGATGGTGATTCCCGAGGTTG
CAGAGGCTGCTGGTCCTGGAGTCTCGCCATCGCTCAAGAACTTCTTGCTGAGCATTGCCGCTGGTGGAGTTGTGGTGATCGCCATACTTGGAGCTGTCATCGGCGTCTCG
AACTTCGATCCGGTTAAGCGTGGCTGA
Protein sequenceShow/hide protein sequence
MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVS
NFDPVKRG