CuGenDBv2

Gene ID	CmoCh11G007900
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	elongation factor P
Genome location	Cmo_Chr11:3917964..3919098
RNA-Seq Expression	CmoCh11G007900
Synteny	CmoCh11G007900
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR013852 - Translation elongation factor P/YeiP, conserved site IPR015365 - Elongation factor P, C-terminal IPR020599 - Translation elongation factor P/YeiP

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588130.1 Mitochondrial dicarboxylate/tricarboxylate transporter DTC, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-32

98.68

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVV+INTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

KAG7022024.1 efp, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-32

100

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

XP_022933865.1 uncharacterized protein LOC111441152 [Cucurbita moschata]

1.0e-32

100

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

XP_022968100.1 uncharacterized protein LOC111467432 [Cucurbita maxima]

3.0e-32

98.68

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAA PKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

XP_023529869.1 uncharacterized protein LOC111792589 [Cucurbita pepo subsp. pepo]

3.0e-32

98.68

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAA PKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BRA6 elongation factor P

4.7e-31

92.11

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVV EAQPPMKGIAA PKEKKA+LDNGMT+KVPPH+VVGDV+VINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

A0A6J1D2T1 uncharacterized protein LOC111016484 isoform X2

3.2e-32

96.05

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAA PKEKKAVLDNGMT+KVPPHVV+GDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

A0A6J1D2U9 uncharacterized protein LOC111016484 isoform X1

1.4e-30

92.41

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTL---KVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAA PKEKKAVLDNGMT+   KVPPHVV+GDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTL---KVPPHVVVGDVVVINTEDDSYIER

A0A6J1F612 uncharacterized protein LOC111441152

5.0e-33

100

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

A0A6J1HW84 uncharacterized protein LOC111467432

1.5e-32

98.68

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAA PKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

SwissProt top hits

e value

%identity

Alignment

B0UJ99 Elongation factor P

4.0e-11

47.37

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        M VM+ L N  PL+  +P+RVT  + E +P  KG  A+   K AVL NG+   VPPH+  G  VVI T D SY+ER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

B1M2B1 Elongation factor P

6.8e-11

44.74

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        M VM+ + N  PL+  +P+RVT  V E +P +KG  A+   K A L NG+   VPPH+  G  VV+ T D SY+ER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

B6INP2 Elongation factor P

6.1e-12

47.37

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        M+V+VQ F   PLS  +P+ VT  + EA P +KG  A+   K AVL+NG+ + VPPHV  G  +V+N ED +Y+ER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

B8IS61 Elongation factor P

3.0e-11

47.37

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        M VM+ L N  PL+  +P+RVT  V E +P  KG  A+   K A L NG+  +VPPH+  G  VVI T D SY+ER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

Q0BXH7 Elongation factor P

6.1e-12

46.05

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        M V +Q+FN  P+S ++P R T  + E +P +KG  A+   K A+L+NG+ + VP HV VG  V+INTED +Y+ER
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

Arabidopsis top hits

e value

%identity

Alignment

AT4G26310.1 elongation factor P (EF-P) family protein

5.3e-19

53.95

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER
        MKV +QL++   LSAS+PK +TC V E Q PMKG+ +AP+ K+A+LDNG T++VP ++  G+ +VINTEDDS+++R
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIER

AT4G26310.2 elongation factor P (EF-P) family protein

6.9e-11

54.72

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Query:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLK
        MKV +QL++   LSAS+PK +TC V E Q PMKG+ +AP+ K+A+LDNG T++
Subjt:  MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLK

Sequences

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CDS sequence

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ATGAAAGTTATGGTTCAACTTTTCAATGACACTCCCTTATCTGCATCGGTTCCAAAACGAGTGACGTGTGTTGTGAAGGAAGCTCAACCACCTATGAAGGGAATTGCAGC
TGCTCCCAAGGAAAAGAAGGCAGTGCTGGACAATGGCATGACATTAAAAGTACCACCACACGTCGTTGTCGGAGATGTTGTAGTGATTAATACAGAGGACGACTCTTATA
TTGAGAGGTATGCCCTCTTGTCATCTGTGAAT

mRNA sequence

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Protein sequence

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MKVMVQLFNDTPLSASVPKRVTCVVKEAQPPMKGIAAAPKEKKAVLDNGMTLKVPPHVVVGDVVVINTEDDSYIERYALLSSVN

CmoCh11G007900 (gene) of Cucurbita moschata (Rifu) v1 genome